View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21315_high_8 (Length: 395)
Name: NF21315_high_8
Description: NF21315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21315_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 13960448 - 13960071
Alignment:
| Q |
1 |
atagaaaacaaagatcaaattcaacaaaaccaagaatcaccaagaaaattacaaaacaatattattggtagtggaaatgagagactaaaaagagatgaat |
100 |
Q |
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| T |
13960448 |
atagaaaacaaagatcaaattcaacaaaaccaagaatcaccaagaaaattacaaaacaatattattggtagtggaaatgagagactaaaaagagatgaat |
13960349 |
T |
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| Q |
101 |
ggagtgaaggagcagttacaacacttcttgaagcatatgaatcaaaatgggtacttagaaatagagcaaaactcaaaggacaagattgggaagatgttgc |
200 |
Q |
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| T |
13960348 |
ggagtgaaggagcagttacaacacttcttgaagcatatgaatcaaaatgggtacttagaaatagagcaaaactcaaaggacaagattgggaagatgttgc |
13960249 |
T |
|
| Q |
201 |
aaaacatgtttcatcaagatcaaactcaactaagtcaccaaagacacaaacacagtgtaagaataagattgagtcaatgaagaaaaggtatagatcagaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13960248 |
aaaacatgtttcatcaagatcaaactcaactaagtcaccaaagacacaaacacagtgtaagaataagattgagtcaatgaagaaaaggtatagatcagaa |
13960149 |
T |
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| Q |
301 |
tcagctagttcagatgtttcatcttggcctttatattcaagacttgatcttcttctacgtgggacaggacaattatct |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
13960148 |
tcagctagttcagatgtttcatcttggcctttatattctagacttgatcttcttctacgtgggacaggacaattatct |
13960071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 4028673 - 4029050
Alignment:
| Q |
1 |
atagaaaacaaagatcaaattcaacaaaaccaagaatcaccaagaaaattacaaaacaatattattggtagtggaaatgagagactaaaaagagatgaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4028673 |
atagaaaacaaagatcaaattcaacaaaaccaagaatcaccaagaaaattacaaaacaatattattggtagtggaaatgagagactaaaaagagatgaat |
4028772 |
T |
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| Q |
101 |
ggagtgaaggagcagttacaacacttcttgaagcatatgaatcaaaatgggtacttagaaatagagcaaaactcaaaggacaagattgggaagatgttgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4028773 |
ggagtgaaggagcagttacaacacttcttgaagcatatgaatcaaaatgggtacttagaaatagagcaaaactcaaaggacaagattgggaagatgttgc |
4028872 |
T |
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| Q |
201 |
aaaacatgtttcatcaagatcaaactcaactaagtcaccaaagacacaaacacagtgtaagaataagattgagtcaatgaagaaaaggtatagatcagaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4028873 |
aaaacatgtttcatcaagatcaaactcaactaagtcaccaaagacacaaacacagtgtaagaataagattgagtcaatgaagaaaaggtatagatcagaa |
4028972 |
T |
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| Q |
301 |
tcagctagttcagatgtttcatcttggcctttatattcaagacttgatcttcttctacgtgggacaggacaattatct |
378 |
Q |
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|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4028973 |
tcagctagttcagatgtttcatcttggcctttgtattctagacttgatcttcttctacgtgggacaggacaattatct |
4029050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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