View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21315_high_9 (Length: 383)
Name: NF21315_high_9
Description: NF21315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21315_high_9 |
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| [»] scaffold0479 (2 HSPs) |
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| [»] scaffold0210 (2 HSPs) |
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| [»] scaffold0464 (1 HSPs) |
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Alignment Details
Target: scaffold0479 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 19 - 376
Target Start/End: Complemental strand, 12166 - 11812
Alignment:
| Q |
19 |
acgttgggaatgatatcaacaatgaagcaattgtaaggtgttactgttatctctctagatcttataatatttttaatatactcaacaatcatgcaaaata |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
12166 |
acgttgggaatgatatcaacaatgaagcaattgtaaggtgtta------tctctctagatcttataatatttttaatatactcaacgatcatgcaaaata |
12073 |
T |
|
| Q |
119 |
tgtgcttgaatcacttaaacagttagagactttcactaaaccgtactcaaatatgaatacggttgcaaaacaacaaaaatattttctgccaaatttcctc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12072 |
tgtgcttgaatcacttaaacagttagagactttcactaaaccgtactcaaatatgaatacggttgcaaaacaacaaaaatattttctgccaaatttcctc |
11973 |
T |
|
| Q |
219 |
aaacattttca---aagttcaaaagagtccagaatagacttatgagtactcttgcaaatgcaatgtgtaagaagttttggatagaaaaactttggattca |
315 |
Q |
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||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
11972 |
aaacattttcaaagaagtccaaaagagtccagaatagacttatgagtactcttgcaaatgcaatgtgtaagaagttttggatacaaaaactttggattca |
11873 |
T |
|
| Q |
316 |
cattctttttgccttgtcatgcaaaactctctgcacatcctgtaatggaccattcttctca |
376 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
11872 |
catcctttttgccttgtcatgcaaaactctctgcacatcctgtaatggaccatccttctca |
11812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 110 - 232
Target Start/End: Complemental strand, 3594 - 3472
Alignment:
| Q |
110 |
tgcaaaatatgtgcttgaatcacttaaacagttagagactttcactaaaccgtactcaaatatgaatacggttgcaaaacaacaaaaatattttctgcca |
209 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| ||| | || |||||||||| || ||| |||||||||||||| ||||||||| || || |
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| T |
3594 |
tgcaaaatatgtgcttgaatcacttaaatagttagagacttccacagacccctactcaaataagagtacagttgcaaaacaacacaaatattttgtggca |
3495 |
T |
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| Q |
210 |
aatttcctcaaacattttcaaag |
232 |
Q |
| |
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||||||| |||||| |||||||| |
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| T |
3494 |
aatttccacaaacactttcaaag |
3472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 376
Target Start/End: Original strand, 12722005 - 12722359
Alignment:
| Q |
19 |
acgttgggaatgatatcaacaatgaagcaattgtaaggtgttactgttatctctctagatcttataatatttttaatatactcaacaatcatgcaaaata |
118 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
12722005 |
acgttgggaatgatataaacaatgaagcaattgtaaggtgtt------atctctctagatcttataatatttttaatatactcaacgatcatgcaaaata |
12722098 |
T |
|
| Q |
119 |
tgtgcttgaatcacttaaacagttagagactttcactaaaccgtactcaaatatgaatacggttgcaaaacaacaaaaatattttctgccaaatttcctc |
218 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12722099 |
tgtgcttgaatcacttaaacagttagagactttcactaaaccgtactcaaatatgaatacggttgcaaaacaacaaaaatattttctgccaaatttcctc |
12722198 |
T |
|
| Q |
219 |
aaacattttca---aagttcaaaagagtccagaatagacttatgagtactcttgcaaatgcaatgtgtaagaagttttggatagaaaaactttggattca |
315 |
Q |
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||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
12722199 |
aaacattttcaaagaagtccaaaagagtccagaatagacttatgagtactcttgcaaatgcaatgtgtaagaagttttggatacaaaaactttggattca |
12722298 |
T |
|
| Q |
316 |
cattctttttgccttgtcatgcaaaactctctgcacatcctgtaatggaccattcttctca |
376 |
Q |
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||| |||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||| |
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| T |
12722299 |
catcctttttgccttgtcatacaaaactctctgcacattctgtaatggaccatccttctca |
12722359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 110 - 232
Target Start/End: Original strand, 12733163 - 12733285
Alignment:
| Q |
110 |
tgcaaaatatgtgcttgaatcacttaaacagttagagactttcactaaaccgtactcaaatatgaatacggttgcaaaacaacaaaaatattttctgcca |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| || || |||||||||| || ||| |||||||||||||| ||||||||| || || |
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| T |
12733163 |
tgcaaaatatgtgcttgaatcacttaaacagttagagacttccacaaacccctactcaaataagagtacagttgcaaaacaacacaaatattttgtggca |
12733262 |
T |
|
| Q |
210 |
aatttcctcaaacattttcaaag |
232 |
Q |
| |
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||||||| |||||| |||||||| |
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| T |
12733263 |
aatttccacaaacactttcaaag |
12733285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 255 - 376
Target Start/End: Original strand, 12715016 - 12715138
Alignment:
| Q |
255 |
ttatgagtactcttgcaaatgcaatgtgtaagaagttttggatagaaaaactttggattcacattctttttgccttgtcatgcaaaactctct-gcacat |
353 |
Q |
| |
|
||||||||| ||||||||||||||| |||||| ||||||||||| ||||||||| |||| ||| |||||||||| ||||||||||||| ||| |||||| |
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| T |
12715016 |
ttatgagtattcttgcaaatgcaatttgtaaggagttttggatacaaaaactttagatttgcatcctttttgcctcgtcatgcaaaactgtctggcacat |
12715115 |
T |
|
| Q |
354 |
cctgtaatggaccattcttctca |
376 |
Q |
| |
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||||||| ||||||| ||||||| |
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| T |
12715116 |
cctgtaacggaccatccttctca |
12715138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 250 - 376
Target Start/End: Original strand, 12709928 - 12710057
Alignment:
| Q |
250 |
tagacttatgagtactcttgcaaatgcaatgtgtaaga-agttttggat-agaaaaactttggattcacattctttttgccttgtcatgcaaaactctct |
347 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||| |||||||||| | |||||||||||| || ||| |||||||||||||||||||||| | || |
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| T |
12709928 |
tagatttatgagtactattgcaaatgcaatgtgtaagagagttttggataaaaaaaactttggactcgcatcctttttgccttgtcatgcaaaaatgcct |
12710027 |
T |
|
| Q |
348 |
-gcacatcctgtaatggaccattcttctca |
376 |
Q |
| |
|
||||||||||||||||||||| ||||||| |
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| T |
12710028 |
ggcacatcctgtaatggaccatccttctca |
12710057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0210 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: scaffold0210
Description:
Target: scaffold0210; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 255 - 376
Target Start/End: Complemental strand, 9319 - 9197
Alignment:
| Q |
255 |
ttatgagtactcttgcaaatgcaatgtgtaagaagttttggatagaaaaactttggattcacattctttttgccttgtcatgcaaaactctct-gcacat |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| ||| ||||||||| |||||||||||||||||||| ||||||||||||| ||| |||||| |
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|
| T |
9319 |
ttatgagtactcttgcaaatgcaatgtgtaaggagttttgcatacaaaaactttagattcacattctttttgcctcgtcatgcaaaactgtctggcacat |
9220 |
T |
|
| Q |
354 |
cctgtaatggaccattcttctca |
376 |
Q |
| |
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||||||||||||||| ||||||| |
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| T |
9219 |
cctgtaatggaccatccttctca |
9197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0210; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 2663 - 2628
Alignment:
| Q |
19 |
acgttgggaatgatatcaacaatgaagcaattgtaa |
54 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
2663 |
acgttgggaatgatatcaacaatgaagcaattgtaa |
2628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0464 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0464
Description:
Target: scaffold0464; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 110 - 232
Target Start/End: Complemental strand, 9596 - 9474
Alignment:
| Q |
110 |
tgcaaaatatgtgcttgaatcacttaaacagttagagactttcactaaaccgtactcaaatatgaatacggttgcaaaacaacaaaaatattttctgcca |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| || || |||||||||| || ||| |||||||||||||| ||||||||| || || |
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|
| T |
9596 |
tgcaaaatatgtgcttgaatcacttaaacagttagagacttccacaaacccctactcaaataagagtacagttgcaaaacaacacaaatattttgtggca |
9497 |
T |
|
| Q |
210 |
aatttcctcaaacattttcaaag |
232 |
Q |
| |
|
||||||| |||||| |||||||| |
|
|
| T |
9496 |
aatttccacaaacactttcaaag |
9474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 265 - 376
Target Start/End: Complemental strand, 19713724 - 19713605
Alignment:
| Q |
265 |
tcttgcaaatgcaatgtgtaagaagttttggatagaaaaactttggattcacattctttttgccttgtcatgcaaaactctct--------gcacatcct |
356 |
Q |
| |
|
|||||| ||||||||||| ||| | ||||||||| || ||||||||||||||| |||||||||||||||||||||| | ||| ||||||||| |
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|
| T |
19713724 |
tcttgccaatgcaatgtgcaaggatttttggatacaataactttggattcacaacctttttgccttgtcatgcaaaagtgtctgccgtctggcacatcct |
19713625 |
T |
|
| Q |
357 |
gtaatggaccattcttctca |
376 |
Q |
| |
|
|||||||||||| ||||||| |
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|
| T |
19713624 |
gtaatggaccatccttctca |
19713605 |
T |
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Back To:
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