View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21315_low_1 (Length: 593)
Name: NF21315_low_1
Description: NF21315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21315_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 18 - 579
Target Start/End: Original strand, 6788838 - 6789402
Alignment:
| Q |
18 |
actactaataacaaaaacaatgatattgagaagctgtttcttcaactctccaccctcacaagcacgttttctttctccttcttcgattcttctctcatcc |
117 |
Q |
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| T |
6788838 |
actactaataacaaaaacaatgatattgagaagctgtttcttcaactctccaccctcacaagcacgttttctttctccttcttcgattcttctctcatcc |
6788937 |
T |
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| Q |
118 |
actacaaaccctaccaggttcattcaaatctctttccattttcaactcttttctcttttaacccgtttaatttttcactcttaccgaatttgagggtttt |
217 |
Q |
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| T |
6788938 |
actccaaaccctaccaggttcattcaaatctctttccattttcaactcttttctcttttaacccgtttaatttttcactcttaccgaatttgagggtttt |
6789037 |
T |
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| Q |
218 |
aatacaaaaataattcacccataatctgtatcttcaagttttttgaaaatcgaacttctccctttgatttgaagaggaatacgttttttctttagttgta |
317 |
Q |
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| T |
6789038 |
aatacaaaaataattcacccataatctgtatcttcaagttttttgaaaatcgaacttctccctttgatttgaagaggaatacgttttttctttagttgta |
6789137 |
T |
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| Q |
318 |
aagtcag---nnnnnnnnnnnatatgggtttttgttaaaatgaaagtgttgtatttgtctgttgttaatttcataataaattagggttttgcatgtaact |
414 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6789138 |
aagtcagttttttttttttttatatgggtttttgttaaaatgaaagtgttgtatttgtctgttgttaatttcataataaattagggttttgcatgtaact |
6789237 |
T |
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| Q |
415 |
tcaattttttatttctttcaggttttggaatttgaacactgcttgtttggttttgtggtggatttgtatagaagaaggtgttaattgcattgtaagtttg |
514 |
Q |
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| T |
6789238 |
tcaattttttctttctttcaggttttggaatttgaacactgcttgtttggttttgtggtggatttgtatagaagaaggtgttaattgcattgtaagtttg |
6789337 |
T |
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| Q |
515 |
tttgattatgctgaaatgannnnnnnagactgtgttgtttttattgtgtttattgatttgtgatg |
579 |
Q |
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| T |
6789338 |
tttgattatgctgaaatgatttttttagactgtgttgtttttattgtgtttattgatttgtgatg |
6789402 |
T |
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