View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21315_low_10 (Length: 380)

Name: NF21315_low_10
Description: NF21315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21315_low_10
NF21315_low_10
[»] chr1 (16 HSPs)
chr1 (105-366)||(3299965-3300227)
chr1 (105-366)||(43044232-43044493)
chr1 (105-366)||(43067498-43067759)
chr1 (105-366)||(43083076-43083337)
chr1 (149-366)||(43077375-43077592)
chr1 (152-329)||(7891776-7891953)
chr1 (152-366)||(38138647-38138861)
chr1 (1-107)||(3299780-3299886)
chr1 (152-353)||(45984493-45984694)
chr1 (174-330)||(50911742-50911898)
chr1 (2-98)||(43082897-43082993)
chr1 (4-98)||(43067844-43067938)
chr1 (9-107)||(43079856-43079954)
chr1 (13-98)||(43044053-43044138)
chr1 (27-99)||(38139007-38139079)
chr1 (254-329)||(40035520-40035595)
[»] chr6 (2 HSPs)
chr6 (144-367)||(7520508-7520731)
chr6 (152-367)||(7530045-7530260)
[»] chr4 (4 HSPs)
chr4 (155-366)||(4230747-4230958)
chr4 (4-97)||(4230525-4230618)
chr4 (176-299)||(19965381-19965504)
chr4 (38-107)||(19965623-19965692)
[»] chr8 (4 HSPs)
chr8 (152-357)||(4618968-4619173)
chr8 (179-313)||(4788300-4788434)
chr8 (12-107)||(4618733-4618826)
chr8 (179-313)||(4296746-4296880)
[»] chr5 (1 HSPs)
chr5 (152-330)||(16348426-16348604)
[»] chr2 (4 HSPs)
chr2 (157-336)||(33860118-33860297)
chr2 (176-310)||(16231484-16231618)
chr2 (182-309)||(34690149-34690276)
chr2 (182-309)||(34712561-34712688)


Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 105 - 366
Target Start/End: Original strand, 3299965 - 3300227
Alignment:
Q  105 ttcacttcttcttcaatgctgactttgtttt-attaagtcctccgctgggatccttcttctccacagccttgatgacaccaacagccacagtttgacgca 203  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  3299965 ttcacttcttcttcaatgctgactttgtttttattaagtcctccgctgggatccttcttctccacagccttgatgacaccaacagccacagtctgacgca 3300064  T
Q  204 tatccctgacagcgaaacggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagcatcaccgtt 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3300065 tatccctgacagcgaaacggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagcatcaccgtt 3300164  T
Q  304 cttcaagaatttgggctccttctcaatctcctttccagaacgcctgtcaatcttagtaacaag 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3300165 cttcaagaatttgggctccttctcaatctcctttccagaacgcctgtcaatcttagtaacaag 3300227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 105 - 366
Target Start/End: Original strand, 43044232 - 43044493
Alignment:
Q  105 ttcacttcttcttcaatgctgactttgttttattaagtcctccgctgggatccttcttctccacagccttgatgacaccaacagccacagtttgacgcat 204  Q
    ||||||||||||||||||||||||| || |  ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  43044232 ttcacttcttcttcaatgctgacttggtctgcttaagtcctccactgggatccttcttctccacagccttgatgaccccaacagccacagtttgacgcat 43044331  T
Q  205 atccctgacagcgaaacggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagcatcaccgttc 304  Q
     || || ||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  43044332 gtctctaacagcaaaacggccgagtggaggatattcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagcatcgccattc 43044431  T
Q  305 ttcaagaatttgggctccttctcaatctcctttccagaacgcctgtcaatcttagtaacaag 366  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  43044432 ttcaagaatttgggctccttctcaatctccttaccagaacgcctatcaatcttagtaacaag 43044493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 105 - 366
Target Start/End: Complemental strand, 43067759 - 43067498
Alignment:
Q  105 ttcacttcttcttcaatgctgactttgttttattaagtcctccgctgggatccttcttctccacagccttgatgacaccaacagccacagtttgacgcat 204  Q
    ||||||||||||||||||||||||| || |  ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  43067759 ttcacttcttcttcaatgctgacttggtctgcttaagtcctccactgggatccttcttctccacagctttgatgacgccaacagccacagtttgacgcat 43067660  T
Q  205 atccctgacagcgaaacggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagcatcaccgttc 304  Q
     || || ||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  43067659 gtctctaacagcaaaacggccgagtggaggatattcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagcatcgccattc 43067560  T
Q  305 ttcaagaatttgggctccttctcaatctcctttccagaacgcctgtcaatcttagtaacaag 366  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  43067559 ttcaagaatttgggctccttctcaatctccttaccagaacgcctatcaatcttagtaacaag 43067498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 105 - 366
Target Start/End: Original strand, 43083076 - 43083337
Alignment:
Q  105 ttcacttcttcttcaatgctgactttgttttattaagtcctccgctgggatccttcttctccacagccttgatgacaccaacagccacagtttgacgcat 204  Q
    ||||||||||||||||||||||||| || |  ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  43083076 ttcacttcttcttcaatgctgacttggtctgcttaagtcctccactgggatccttcttctccacagctttgatgacgccaacagccacagtttgacgcat 43083175  T
Q  205 atccctgacagcgaaacggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagcatcaccgttc 304  Q
     || || ||||| ||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  43083176 gtctctaacagcaaaacgaccgagtggaggatattcagagaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagcatcgccattc 43083275  T
Q  305 ttcaagaatttgggctccttctcaatctcctttccagaacgcctgtcaatcttagtaacaag 366  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  43083276 ttcaagaatttgggctccttctcaatctccttaccagaacgcctatcaatcttagtaacaag 43083337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 149 - 366
Target Start/End: Complemental strand, 43077592 - 43077375
Alignment:
Q  149 ctgggatccttcttctccacagccttgatgacaccaacagccacagtttgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaag 248  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| | ||||||| ||  |||||||||||||||||||| ||||||||||    
T  43077592 ctgggatccttctactccacagccgtgatgacaccaacagccacagtttgacgcttgtccctgatagtaaaacggccaagtggaggatattcagagaaag 43077493  T
Q  249 tctcaaccaccatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaatttgggctccttctcaatctcctttccagaacgcct 348  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||| | |||||||| || | |||||||||||    
T  43077492 tctcaaccaccatgggcttggtgggaatcatcttaataataccagcatcaccattcatcaggaatttgggcttcgtctcaatcaccataccagaacgcct 43077393  T
Q  349 gtcaatcttagtaacaag 366  Q
     |||||||| ||||||||    
T  43077392 atcaatcttggtaacaag 43077375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 152 - 329
Target Start/End: Complemental strand, 7891953 - 7891776
Alignment:
Q  152 ggatccttcttctccacagccttgatgacaccaacagccacagtttgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtct 251  Q
    |||||||| |||| |||| |||||||||| |||| |||||||||||||||||| || |||||||| ||||| ||||||| ||||||  |||  |||||||    
T  7891953 ggatccttattcttcacatccttgatgactccaatagccacagtttgacgcatgtctctgacagcaaaacgaccaagtgaaggatatgcagtaaaagtct 7891854  T
Q  252 caaccaccatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaatttgggctccttctcaa 329  Q
    | |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  7891853 ctaccaccatgggcttggtgggaatcatcttaataataccagcatcgccattcttcaagaatttgggctccttctcaa 7891776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 152 - 366
Target Start/End: Complemental strand, 38138861 - 38138647
Alignment:
Q  152 ggatccttcttctccacagccttgatgacaccaacagccacagtttgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtct 251  Q
    ||||||||||||| |||| || ||||||| ||||||||||||||||||||||| || |||||||| ||||||||||||||||||||   ||| |||  ||    
T  38138861 ggatccttcttcttcacaaccatgatgactccaacagccacagtttgacgcatgtctctgacagcaaaacggccaagtggaggataagtagaaaaatcct 38138762  T
Q  252 caaccaccatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaatttgggctccttctcaatctcctttccagaacgcctgtc 351  Q
    | |||||||||| |||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||| || |||   ||||||  ||||||    
T  38138761 ctaccaccatggacttggtgggaatcatcttaacaacaccagcatcaccattcttcaagaatttgggctccttctcgatttccaaaccagaaaacctgtc 38138662  T
Q  352 aatcttagtaacaag 366  Q
    || ||| ||||||||    
T  38138661 aaacttggtaacaag 38138647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 3299886 - 3299780
Alignment:
Q  1 ttcgtcttgttaacttgtttttcggattaagtgtcaagtctgcactgtcatctcgcaacttttgttcccaaaactgggttcttgatcgacggtggcaggg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299886 ttcgtcttgttaacttgtttttcggattaagtgtcaagtctgcaccgtcatctcgcaacttttgttcccaaaactgggttcttgatcgacggtggcaggg 3299787  T
Q  101 ctatttc 107  Q
    |||||||    
T  3299786 ctatttc 3299780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 152 - 353
Target Start/End: Complemental strand, 45984694 - 45984493
Alignment:
Q  152 ggatccttcttctccacagccttgatgacaccaacagccacagtttgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtct 251  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||| ||   || |||||| | |||||||| |||||||||||   |||||||| ||    
T  45984694 ggatccttcttcttcacagccttgatgactccaacagccacagtttgatgccagtctctgacaacaaaacggccgagtggaggatatagagagaaaggct 45984595  T
Q  252 caaccaccatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaatttgggctccttctcaatctcctttccagaacgcctgtc 351  Q
    | |||||||| ||||||||||||||||||||||||||||||| ||||||  || |||| |||||||||||| ||||||| ||||  ||||||| ||||||    
T  45984594 ctaccaccataggcttggtgggaatcatcttaataataccagtatcaccactcatcaaaaatttgggctccctctcaatttcctcaccagaacacctgtc 45984495  T
Q  352 aa 353  Q
    ||    
T  45984494 aa 45984493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 174 - 330
Target Start/End: Original strand, 50911742 - 50911898
Alignment:
Q  174 tgatgacaccaacagccacagtttgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtggg 273  Q
    ||||||| ||||||||||||||||||||||| || |||||||| |||||||| |||| |||| | |  || |||||||| |||| |||||||||||||||    
T  50911742 tgatgactccaacagccacagtttgacgcatgtctctgacagcaaaacggccgagtgaaggaaatttggaaaaagtctctaccaacatgggcttggtggg 50911841  T
Q  274 aatcatcttaataataccagcatcaccgttcttcaagaatttgggctccttctcaat 330  Q
    |||||||| ||||| |||||| ||||| |||||||||||||||||||||||||||||    
T  50911842 aatcatctcaataacaccagcgtcaccattcttcaagaatttgggctccttctcaat 50911898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 2 - 98
Target Start/End: Complemental strand, 43082993 - 43082897
Alignment:
Q  2 tcgtcttgttaacttgtttttcggattaagtgtcaagtctgcactgtcatctcgcaacttttgttcccaaaactgggttcttgatcgacggtggcag 98  Q
    |||||| ||| |||||||||||  ||||||||||||||||||||  |||||||  | ||||||||| || ||||||||||| |||||||||||||||    
T  43082993 tcgtctagtttacttgtttttcatattaagtgtcaagtctgcaccttcatctcttagcttttgttctcagaactgggttctagatcgacggtggcag 43082897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 4 - 98
Target Start/End: Original strand, 43067844 - 43067938
Alignment:
Q  4 gtcttgttaacttgtttttcggattaagtgtcaagtctgcactgtcatctcgcaacttttgttcccaaaactgggttcttgatcgacggtggcag 98  Q
    |||| ||| |||||||||||  ||||||||||||||||||||  |||||||  | ||||||||| || ||||||||||| |||||||||||||||    
T  43067844 gtctagtttacttgtttttcatattaagtgtcaagtctgcaccttcatctcttagcttttgttctcagaactgggttctagatcgacggtggcag 43067938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 43079856 - 43079954
Alignment:
Q  9 gttaacttgtttttcggattaagtgtcaagtctgcactgtcatctcgcaacttttgttcccaaaactgggttcttgatcgacggtggcagggctatttc 107  Q
    ||||||||||||||| ||||||||||||||||||||| ||| ||||||| |  |||||||||  | ||||||||  |||||| |||||| |||| ||||    
T  43079856 gttaacttgtttttcagattaagtgtcaagtctgcaccgtcgtctcgcagcccttgttcccaggattgggttctatatcgactgtggcaaggctttttc 43079954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 43044138 - 43044053
Alignment:
Q  13 acttgtttttcggattaagtgtcaagtctgcactgtcatctcgcaacttttgttcccaaaactgggttcttgatcgacggtggcag 98  Q
    |||||||||||  ||||||||||||||||||||  |||||||  | ||| ||||| || ||||||||||| |||||||||||||||    
T  43044138 acttgtttttcatattaagtgtcaagtctgcaccttcatctcttagcttgtgttctcagaactgggttctagatcgacggtggcag 43044053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 38139007 - 38139079
Alignment:
Q  27 ttaagtgtcaagtctgcactgtcatctcgcaacttttgttcccaaaactgggttcttgatcgacggtggcagg 99  Q
    ||||||||||||||||||| |||||||| || |||||||||| | |||||| |||| ||| || |||||||||    
T  38139007 ttaagtgtcaagtctgcaccgtcatctcacagcttttgttccaagaactggcttctagattgatggtggcagg 38139079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 329
Target Start/End: Complemental strand, 40035595 - 40035520
Alignment:
Q  254 accaccatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaatttgggctccttctcaa 329  Q
    ||||||||||||||||| |||||||| | || ||  ||  ||||||| |||| ||||||||||||||||| |||||    
T  40035595 accaccatgggcttggttggaatcatttcaacaagccccccatcaccattctccaagaatttgggctcctgctcaa 40035520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 160; Significance: 4e-85; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 144 - 367
Target Start/End: Complemental strand, 7520731 - 7520508
Alignment:
Q  144 ctccgctgggatccttcttctccacagccttgatgacaccaacagccacagtttgacgcatatccctgacagcgaaacggccaagtggaggatactcaga 243  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| || ||||| ||||| |||||||| ||||     
T  7520731 ctccggtgggatccttcttctccacagccttgatgacaccaacagcaacagtttgacgcatgtccctgacggcaaaacgtccaagaggaggatattcagc 7520632  T
Q  244 gaaagtctcaaccaccatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaatttgggctccttctcaatctcctttccagaa 343  Q
    ||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||     
T  7520631 gaaggtctcaaccaccatgggcttggtgggaaccatcttaatgataccagcatcaccgttcttcaagaacttgggctccttctcaatctccttaccagat 7520532  T
Q  344 cgcctgtcaatcttagtaacaagt 367  Q
    |||||||||||||| |||||||||    
T  7520531 cgcctgtcaatcttggtaacaagt 7520508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 152 - 367
Target Start/End: Complemental strand, 7530260 - 7530045
Alignment:
Q  152 ggatccttcttctccacagccttgatgacaccaacagccacagtttgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtct 251  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||| ||||  || ||||    
T  7530260 ggatccttcttctccacagccttgatgacaccaacagcaacagtttgacgcatgtccctgacagcaaaacgtccaagaggaggatattcagcaaaggtct 7530161  T
Q  252 caaccaccatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaatttgggctccttctcaatctcctttccagaacgcctgtc 351  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||||||    
T  7530160 caaccaccatgggcttggtgggaaccatcttaatgataccagcatcaccattcttcaagaacttgggctccttctcaatctccttaccagatcgcctgtc 7530061  T
Q  352 aatcttagtaacaagt 367  Q
    |||||| |||||||||    
T  7530060 aatcttggtaacaagt 7530045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 160; Significance: 4e-85; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 155 - 366
Target Start/End: Original strand, 4230747 - 4230958
Alignment:
Q  155 tccttcttctccacagccttgatgacaccaacagccacagtttgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtctcaa 254  Q
    ||||||||||||||| ||||||| || ||||||||||||||||| |||||||| |||||||| |||||||||||||||||||| ||||||||||||||||    
T  4230747 tccttcttctccacacccttgataaccccaacagccacagtttgccgcatatctctgacagcaaaacggccaagtggaggatattcagagaaagtctcaa 4230846  T
Q  255 ccaccatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaatttgggctccttctcaatctcctttccagaacgcctgtcaat 354  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||| ||||||||||| |||||||| |||||||||||||||||    
T  4230847 ccaccatgggcttggtgggaatcatcttaataataccagcatctccattcttcaggaatttaggctccttctcgatctccttaccagaacgcctgtcaat 4230946  T
Q  355 cttagtaacaag 366  Q
    ||||||||||||    
T  4230947 cttagtaacaag 4230958  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 4230618 - 4230525
Alignment:
Q  4 gtcttgttaacttgtttttcggattaagtgtcaagtctgcactgtcatctcgcaacttttgttcccaaaactgggttcttgatcgacggtggca 97  Q
    |||||||||| |||||||| ||||||||||| |||||||||| |||||||| || |||||||||||| ||||||||||| ||||||||||||||    
T  4230618 gtcttgttaagttgttttttggattaagtgtgaagtctgcaccgtcatctcccagcttttgttcccagaactgggttctagatcgacggtggca 4230525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 299
Target Start/End: Complemental strand, 19965504 - 19965381
Alignment:
Q  176 atgacaccaacagccacagtttgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaa 275  Q
    ||||| |||| |||||||||||||||||| || ||  || | |||| ||| ||||||||||| | |||||||| ||| |||||||| ||||||| |||||    
T  19965504 atgactccaaaagccacagtttgacgcatgtctctagcaacaaaacagccgagtggaggatattgagagaaagcctctaccaccataggcttggcgggaa 19965405  T
Q  276 tcatcttaataataccagcatcac 299  Q
    ||||||||| || | |||||||||    
T  19965404 tcatcttaacaacagcagcatcac 19965381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 19965623 - 19965692
Alignment:
Q  38 gtctgcactgtcatctcgcaacttttgttcccaaaactgggttcttgatcgacggtggcagggctatttc 107  Q
    |||||||||||  ||| ||| |||| ||||||| |||||| |||| ||||||| |||||||||| |||||    
T  19965623 gtctgcactgttgtcttgcagctttcgttcccagaactggcttctagatcgacagtggcagggccatttc 19965692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 1e-57; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 152 - 357
Target Start/End: Original strand, 4618968 - 4619173
Alignment:
Q  152 ggatccttcttctccacagccttgatgacaccaacagccacagtttgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtct 251  Q
    ||||||||||||| ||||||||| ||||| ||||||||||| ||| |||| || || |||||||| |||||||| |||| |||||| | ||| |||||||    
T  4618968 ggatccttcttcttcacagccttaatgactccaacagccactgttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtct 4619067  T
Q  252 caaccaccatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaatttgggctccttctcaatctcctttccagaacgcctgtc 351  Q
    | ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||| ||||||||  |||| ||||||| ||||||    
T  4619068 ctaccaccatgggcttggtgggaatcatcttaataatgccagcatcaccattcttcaggaatttgggctcattctcaattaccttaccagaacacctgtc 4619167  T
Q  352 aatctt 357  Q
    ||||||    
T  4619168 aatctt 4619173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 179 - 313
Target Start/End: Complemental strand, 4788434 - 4788300
Alignment:
Q  179 acaccaacagccacagtttgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatca 278  Q
    ||||||||||||||||||||| |||  |  | |||| | ||| ||||||||||||||||   | |||||| ||| |||||||| ||||||||||||| ||    
T  4788434 acaccaacagccacagtttgatgcaagtatcggacaacaaaatggccaagtggaggatatagatagaaaggctctaccaccataggcttggtgggaacca 4788335  T
Q  279 tcttaataataccagcatcaccgttcttcaagaat 313  Q
    ||| ||||| |||| ||||||| ||||||||||||    
T  4788334 tctcaataagaccatcatcaccattcttcaagaat 4788300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 4618826 - 4618733
Alignment:
Q  12 aacttgtttttcggattaagtgtcaagtctgcactgtcatctcgcaacttttgttcccaaaactgggttcttgatcgacggtggcagggctatttc 107  Q
    |||||||||| | | ||||||||||||||||||||||||| |  ||  ||||||||| | |||| |||||| ||| ||| ||||||||||||||||    
T  4618826 aacttgttttgcaggttaagtgtcaagtctgcactgtcatat--cagtttttgttcctagaactcggttctagattgactgtggcagggctatttc 4618733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 313
Target Start/End: Original strand, 4296746 - 4296880
Alignment:
Q  179 acaccaacagccacagtttgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatca 278  Q
    ||||||||||||||| ||||| |||  ||   |||| | |||||||  ||||||||| |   |||||||| ||| |||||||| | || |||||||||||    
T  4296746 acaccaacagccacaatttgatgcaagtcttggacaacaaaacggctgagtggaggagatagagagaaaggctctaccaccatagactcggtgggaatca 4296845  T
Q  279 tcttaataataccagcatcaccgttcttcaagaat 313  Q
    ||||||||| || |   ||||| ||||||||||||    
T  4296846 tcttaataagacaattgtcaccattcttcaagaat 4296880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 152 - 330
Target Start/End: Original strand, 16348426 - 16348604
Alignment:
Q  152 ggatccttcttctccacagccttgatgacaccaacagccacagtttgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtct 251  Q
    ||||||||||| | |||| ||  |||||  |||| ||||||||||||| || |||| ||||||   |||||||| |||| |||||| ||||| |||||||    
T  16348426 ggatccttcttgttcacaaccaagatgattccaatagccacagtttgatgcgtatctctgacaataaaacggccgagtgaaggatattcagaaaaagtct 16348525  T
Q  252 caaccaccatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaatttgggctccttctcaat 330  Q
    | |||||||||||||||||||||||||||| |||||| ||| ||||||| |||||||||||||||||||||||| ||||    
T  16348526 ctaccaccatgggcttggtgggaatcatctgaataatgccaccatcacctttcttcaagaatttgggctccttcacaat 16348604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 7e-28; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 157 - 336
Target Start/End: Original strand, 33860118 - 33860297
Alignment:
Q  157 cttcttctccacagccttgatgacaccaacagccacagtttgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtctcaacc 256  Q
    |||| ||||||||| |  |||||| |||| |||||||||||||||| | || ||  || | |||||||| ||||||||||| | || ||||  ||| |||    
T  33860118 cttcctctccacagacgcgatgacgccaaaagccacagtttgacgcctgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctacc 33860217  T
Q  257 accatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaatttgggctccttctcaatctcctt 336  Q
    ||||| ||||||||||||||||||||||||  | ||||||||||  ||||||||||||  |||||||||||||| |||||    
T  33860218 accataggcttggtgggaatcatcttaatagcagcagcatcaccactcttcaagaattcaggctccttctcaatttcctt 33860297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 176 - 310
Target Start/End: Original strand, 16231484 - 16231618
Alignment:
Q  176 atgacaccaacagccacagtttgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaa 275  Q
    ||||| ||||||||||||||||||||||| || |||||||| ||||| ||||| | |||||| |||  || |  ||| |||||||| |||||  | ||||    
T  16231484 atgactccaacagccacagtttgacgcatgtctctgacagcaaaacgaccaagggaaggatattcattgataccctccaccaccataggcttcataggaa 16231583  T
Q  276 tcatcttaataataccagcatcaccgttcttcaag 310  Q
    ||||||||| ||| || |||||||| |||||||||    
T  16231584 tcatcttaacaattcctgcatcaccattcttcaag 16231618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 309
Target Start/End: Original strand, 34690149 - 34690276
Alignment:
Q  182 ccaacagccacagtttgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatct 281  Q
    ||||||||||||||||||||||| || |||||||| ||||||||||| |  ||||| |||  || |  ||| || |||||||| ||  | ||||||||||    
T  34690149 ccaacagccacagtttgacgcatgtctctgacagcaaaacggccaagggatggatattcattgataccctccacgaccatgggtttcataggaatcatct 34690248  T
Q  282 taataataccagcatcaccgttcttcaa 309  Q
    ||| || | | |||||||| ||||||||    
T  34690249 taacaacagcggcatcaccattcttcaa 34690276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 309
Target Start/End: Original strand, 34712561 - 34712688
Alignment:
Q  182 ccaacagccacagtttgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtctcaaccaccatgggcttggtgggaatcatct 281  Q
    ||||||||||||||||||||||| || |||||||| ||||||||||| |  ||||| |||  || |  ||| || |||||||| ||  | ||||||||||    
T  34712561 ccaacagccacagtttgacgcatgtctctgacagcaaaacggccaagggatggatattcattgataccctccacgaccatgggtttcataggaatcatct 34712660  T
Q  282 taataataccagcatcaccgttcttcaa 309  Q
    ||| || | | |||||||| ||||||||    
T  34712661 taacaacagcggcatcaccattcttcaa 34712688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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