View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21315_low_12 (Length: 347)

Name: NF21315_low_12
Description: NF21315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21315_low_12
NF21315_low_12
[»] chr7 (8 HSPs)
chr7 (15-347)||(48532725-48533057)
chr7 (16-347)||(41511384-41511718)
chr7 (77-185)||(41518136-41518244)
chr7 (77-185)||(41537115-41537223)
chr7 (277-347)||(41520685-41520758)
chr7 (40-113)||(41564468-41564541)
chr7 (29-117)||(41562570-41562658)
chr7 (70-116)||(3086715-3086761)
[»] chr5 (1 HSPs)
chr5 (16-125)||(20155190-20155299)
[»] chr4 (1 HSPs)
chr4 (67-138)||(8136507-8136578)
[»] scaffold0288 (1 HSPs)
scaffold0288 (70-116)||(3510-3556)
[»] chr6 (10 HSPs)
chr6 (70-116)||(4461418-4461464)
chr6 (73-116)||(4626246-4626289)
chr6 (70-116)||(4504188-4504234)
chr6 (70-116)||(4592526-4592572)
chr6 (70-116)||(4613509-4613555)
chr6 (70-116)||(4617317-4617363)
chr6 (70-116)||(4622437-4622483)
chr6 (70-115)||(4490146-4490191)
chr6 (75-123)||(845012-845060)
chr6 (75-123)||(870296-870344)
[»] chr3 (1 HSPs)
chr3 (76-123)||(35774614-35774661)
[»] chr8 (3 HSPs)
chr8 (85-122)||(3770197-3770234)
chr8 (74-119)||(33005112-33005157)
chr8 (92-124)||(36742471-36742503)


Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 15 - 347
Target Start/End: Original strand, 48532725 - 48533057
Alignment:
Q  15 caaagggagaggccttataattagaggttgggctccacaagtgctaatattatcacacccttcaattggaggattcttaacacattgtggatggaattca 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48532725 caaagggagaggccttataattagaggttgggctccacaagtgctaatattatcacacccttcaattggaggattcttaacacattgtggatggaattca 48532824  T
Q  115 acacttgaagggataagtgctggtttgccattggtaacttggctgttatttgctgaccaatttttgaatgagaagcttgttactcaagtgttgaggattg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48532825 acacttgaagggataagtgctggtttgccattggtaacttggccgttatttgctgaccaatttttgaatgagaagcttgttactcaagtgttgaggattg 48532924  T
Q  215 gagtgagccttggtgtagaggttccaatgaggttgggagtggaagagagtttaggtgtgttggtgaagaaggaaggtattaaagaggcaatatgcatggt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48532925 gagtgagccttggtgtagaggttccaatgaggttgggagtggaagagagtttaggtgtgttggtgaagaaggaaggtattaaagaggcaatatgcatggt 48533024  T
Q  315 gatggatgagggagaagaaagtaaagagagaag 347  Q
    |||||||||||||||||||||||||||||||||    
T  48533025 gatggatgagggagaagaaagtaaagagagaag 48533057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 16 - 347
Target Start/End: Original strand, 41511384 - 41511718
Alignment:
Q  16 aaagggagaggccttataattagaggttgggctccacaagtgctaatattatcacacccttcaattggaggattcttaacacattgtggatggaattcaa 115  Q
    ||||||||||| |||||||||||||| ||||| |||||| || | |||||||||||  |||||||||| ||||| || || |||||||| ||||||||||    
T  41511384 aaagggagaggacttataattagagggtgggccccacaaatggtgatattatcacattcttcaattggtggatttttgactcattgtggttggaattcaa 41511483  T
Q  116 cacttgaagggataagtgctggtttgccattggtaacttggctgttatttgctgaccaatttttgaatgagaagcttgttactcaagtgttgaggattgg 215  Q
    |||||||||||||||||  |||| | ||| ||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  41511484 cacttgaagggataagttttggtgtaccaatggtaacttggccattatttgctgaccaatttttgaatgagaaacttgttactcaagttttgaggattgg 41511583  T
Q  216 agtgagccttggtgtagaggttccaatgaggttgggagtggaagagagtttaggtgtgttggtgaagaaggaaggtattaaagaggcaatatgcatggtg 315  Q
    |||||| |||||||| ||  ||||| |||  | ||||| ||||||||  ||||| ||| | ||||||||||||| ||||||||||||||||||||  |||    
T  41511584 agtgagtcttggtgttgaatttccattgaattggggagaggaagagaaattaggggtggttgtgaagaaggaagttattaaagaggcaatatgcaatgtg 41511683  T
Q  316 atggatgaggga---gaagaaagtaaagagagaag 347  Q
    ||| |||||| |   ||||| ||||||||||||||    
T  41511684 atgaatgaggaagttgaagagagtaaagagagaag 41511718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 77 - 185
Target Start/End: Original strand, 41518136 - 41518244
Alignment:
Q  77 caattggaggattcttaacacattgtggatggaattcaacacttgaagggataagtgctggtttgccattggtaacttggctgttatttgctgaccaatt 176  Q
    |||||||||||||||||||||||||||| |||||||| || |||||||  ||| |||||||| | ||| |||| || ||||   | ||||| ||||||||    
T  41518136 caattggaggattcttaacacattgtggttggaattctactcttgaagcaatatgtgctggtgtaccaatggttacatggccactttttgcagaccaatt 41518235  T
Q  177 tttgaatga 185  Q
    |||||||||    
T  41518236 tttgaatga 41518244  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 77 - 185
Target Start/End: Original strand, 41537115 - 41537223
Alignment:
Q  77 caattggaggattcttaacacattgtggatggaattcaacacttgaagggataagtgctggtttgccattggtaacttggctgttatttgctgaccaatt 176  Q
    |||||||||||||||||||||||||||| |||||||| || |||||||  ||| |||||||| | ||| |||| || ||||   | ||||| || |||||    
T  41537115 caattggaggattcttaacacattgtggttggaattctactcttgaagcaatatgtgctggtgtaccaatggttacatggccactttttgcggatcaatt 41537214  T
Q  177 tttgaatga 185  Q
    |||||||||    
T  41537215 tttgaatga 41537223  T

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Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 277 - 347
Target Start/End: Original strand, 41520685 - 41520758
Alignment:
Q  277 gtgaagaaggaaggtattaaagaggcaatatgcatggtgatggatgagggag---aagaaagtaaagagagaag 347  Q
    ||||||||||||||||||||||||||||||||||  |||||| |||||| ||   |||| ||||||||||||||    
T  41520685 gtgaagaaggaaggtattaaagaggcaatatgcaatgtgatgaatgaggaagatcaagagagtaaagagagaag 41520758  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 41564468 - 41564541
Alignment:
Q  40 ggttgggctccacaagtgctaatattatcacacccttcaattggaggattcttaacacattgtggatggaattc 113  Q
    ||||||||||| |||||  | ||| ||||||||  |||| ||||||||||||||||||| ||||| ||||||||    
T  41564468 ggttgggctcctcaagttttgatactatcacacttttcagttggaggattcttaacacactgtggctggaattc 41564541  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 41562570 - 41562658
Alignment:
Q  29 ttataattagaggttgggctccacaagtgctaatattatcacacccttcaattggaggattcttaacacattgtggatggaattcaaca 117  Q
    ||||| ||| ||| ||||||||||||||   |||||| ||||| ||||||| ||| ||||| ||| | |||||||| ||||||||||||    
T  41562570 ttatagttaaaggatgggctccacaagttgaaatattgtcacatccttcaactggtggatttttatctcattgtggttggaattcaaca 41562658  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 116
Target Start/End: Complemental strand, 3086761 - 3086715
Alignment:
Q  70 cacccttcaattggaggattcttaacacattgtggatggaattcaac 116  Q
    |||||||||||||| |||||||| || |||||||||||||| |||||    
T  3086761 cacccttcaattggtggattcttgactcattgtggatggaactcaac 3086715  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 20155190 - 20155299
Alignment:
Q  16 aaagggagaggccttataattagaggttgggctccacaagtgctaatattatcacacccttcaattggaggattcttaacacattgtggatggaattcaa 115  Q
    ||||||||||| ||| | |||| ||| ||||| |||||| |  ||||| | || || |||||||||||||||||||| ||||||||||||||||||||||    
T  20155190 aaagggagaggacttttgattaaaggatgggcaccacaaattttaatactttctcatccttcaattggaggattcttgacacattgtggatggaattcaa 20155289  T
Q  116 cacttgaagg 125  Q
    || |||||||    
T  20155290 caattgaagg 20155299  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 138
Target Start/End: Complemental strand, 8136578 - 8136507
Alignment:
Q  67 tcacacccttcaattggaggattcttaacacattgtggatggaattcaacacttgaagggataagtgctggt 138  Q
    ||||| ||| |||||||||||||||||||||||||||| |||||||| ||| | ||||  ||| ||||||||    
T  8136578 tcacatcctgcaattggaggattcttaacacattgtggttggaattctacaatggaagcaatatgtgctggt 8136507  T

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Target: scaffold0288 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 3510 - 3556
Alignment:
Q  70 cacccttcaattggaggattcttaacacattgtggatggaattcaac 116  Q
    |||||||||||||| |||||||| || ||||||||||||||||||||    
T  3510 cacccttcaattggtggattcttgactcattgtggatggaattcaac 3556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 116
Target Start/End: Complemental strand, 4461464 - 4461418
Alignment:
Q  70 cacccttcaattggaggattcttaacacattgtggatggaattcaac 116  Q
    |||||||||||||| |||||||| || ||||||||||||||||||||    
T  4461464 cacccttcaattggtggattcttgactcattgtggatggaattcaac 4461418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 4626289 - 4626246
Alignment:
Q  73 ccttcaattggaggattcttaacacattgtggatggaattcaac 116  Q
    ||||||||||| ||||||||||| |||||||||||||| |||||    
T  4626289 ccttcaattggtggattcttaactcattgtggatggaactcaac 4626246  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 4504188 - 4504234
Alignment:
Q  70 cacccttcaattggaggattcttaacacattgtggatggaattcaac 116  Q
    ||||||||||| ||||||||||| || |||||||||||||| |||||    
T  4504188 cacccttcaatcggaggattcttgactcattgtggatggaactcaac 4504234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 116
Target Start/End: Complemental strand, 4592572 - 4592526
Alignment:
Q  70 cacccttcaattggaggattcttaacacattgtggatggaattcaac 116  Q
    |||||||||||||| |||||||| || |||||||||||||| |||||    
T  4592572 cacccttcaattggtggattcttgactcattgtggatggaactcaac 4592526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 4613509 - 4613555
Alignment:
Q  70 cacccttcaattggaggattcttaacacattgtggatggaattcaac 116  Q
    |||||||||||||| |||||||| || |||||||||||||| |||||    
T  4613509 cacccttcaattggcggattcttgactcattgtggatggaactcaac 4613555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 116
Target Start/End: Complemental strand, 4617363 - 4617317
Alignment:
Q  70 cacccttcaattggaggattcttaacacattgtggatggaattcaac 116  Q
    ||||||||||| ||||||||||| || ||||| ||||||||||||||    
T  4617363 cacccttcaatcggaggattcttgactcattgcggatggaattcaac 4617317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 116
Target Start/End: Complemental strand, 4622483 - 4622437
Alignment:
Q  70 cacccttcaattggaggattcttaacacattgtggatggaattcaac 116  Q
    |||||| ||||||| |||||||| || ||||||||||||||||||||    
T  4622483 caccctgcaattggtggattcttgactcattgtggatggaattcaac 4622437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 4490146 - 4490191
Alignment:
Q  70 cacccttcaattggaggattcttaacacattgtggatggaattcaa 115  Q
    |||||||||||||| |||||||| || |||||||||||||| ||||    
T  4490146 cacccttcaattggtggattcttgactcattgtggatggaactcaa 4490191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 845060 - 845012
Alignment:
Q  75 ttcaattggaggattcttaacacattgtggatggaattcaacacttgaa 123  Q
    ||||||||| || || ||||| |||||||| ||||||||||||||||||    
T  845060 ttcaattggtgggtttttaactcattgtggttggaattcaacacttgaa 845012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 870344 - 870296
Alignment:
Q  75 ttcaattggaggattcttaacacattgtggatggaattcaacacttgaa 123  Q
    ||||||||| || || ||||| |||||||| ||||||||||||||||||    
T  870344 ttcaattggtgggtttttaactcattgtggttggaattcaacacttgaa 870296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 35774661 - 35774614
Alignment:
Q  76 tcaattggaggattcttaacacattgtggatggaattcaacacttgaa 123  Q
    |||||||| ||||||||||| |||||||| |||||||| |||||||||    
T  35774661 tcaattgggggattcttaactcattgtggttggaattctacacttgaa 35774614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 122
Target Start/End: Complemental strand, 3770234 - 3770197
Alignment:
Q  85 ggattcttaacacattgtggatggaattcaacacttga 122  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  3770234 ggatttttaacacattgtggttggaattcaacacttga 3770197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 33005157 - 33005112
Alignment:
Q  74 cttcaattggaggattcttaacacattgtggatggaattcaacact 119  Q
    |||||| ||| ||||| |||||||||||||| ||||||||||||||    
T  33005157 cttcaactggtggatttttaacacattgtggttggaattcaacact 33005112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 124
Target Start/End: Original strand, 36742471 - 36742503
Alignment:
Q  92 taacacattgtggatggaattcaacacttgaag 124  Q
    |||||||| ||||||||||||||||||||||||    
T  36742471 taacacatagtggatggaattcaacacttgaag 36742503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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