View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21315_low_18 (Length: 280)
Name: NF21315_low_18
Description: NF21315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21315_low_18 |
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| [»] scaffold0286 (1 HSPs) |
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Alignment Details
Target: scaffold0286 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 262
Target Start/End: Complemental strand, 13391 - 13142
Alignment:
| Q |
13 |
aatatataggtggaagaattctcggccagattatacttaccacacaatcgaactttgaattacaagagcctcttccctgaaaatgggaggggttaacacc |
112 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| | | ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13391 |
aatatataggtggaagaattcttggccagattatacttaccacatgaccaaacattgaattacaagagcctcttccctgaaaatgggaggggttaacacc |
13292 |
T |
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| Q |
113 |
caacaaatatccatgcattatcagatgcaggttgaattgttttttctaaaggtaaatagatataaacaaacctgaacgggaaaaaacactctctggaata |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
13291 |
caacaaatatccatgcattatcagatgcaggttgaattgttttttctaaaggtaaatagatatatacaaacctgaacgggaaaaaacactctccggaata |
13192 |
T |
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| Q |
213 |
gaacagaatacaaagggaaaagctacatacaagtctgtgccctacaggaa |
262 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
13191 |
gaacagaatacaaagagaaaagctacatacaagtctgtgccctacaggaa |
13142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 262
Target Start/End: Original strand, 2169871 - 2170120
Alignment:
| Q |
13 |
aatatataggtggaagaattctcggccagattatacttaccacacaatcgaactttgaattacaagagcctcttccctgaaaatgggaggggttaacacc |
112 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| | | ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2169871 |
aatatataggtggaagaattcttggccagattatacttaccacatgaccaaacattgaattacaagagcctcttccctgaaaatgggaggggttaacacc |
2169970 |
T |
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| Q |
113 |
caacaaatatccatgcattatcagatgcaggttgaattgttttttctaaaggtaaatagatataaacaaacctgaacgggaaaaaacactctctggaata |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
2169971 |
caacaaatatccatgcattatcagatgcaggttgaattgttttttctaaaggtaaatagatatatacaaacctgaacgggaaaaaacactctccggaata |
2170070 |
T |
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| Q |
213 |
gaacagaatacaaagggaaaagctacatacaagtctgtgccctacaggaa |
262 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2170071 |
gaacagaatacaaagagaaaagctacatacaagtctgtgccctacaggaa |
2170120 |
T |
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