View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21315_low_21 (Length: 240)
Name: NF21315_low_21
Description: NF21315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21315_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 41460245 - 41460026
Alignment:
| Q |
13 |
acagactatgacaaaaatgagccaatcattcatagcagttataca--------cgcctcgctaccttcccttcccagttacttttactagttacaaccac |
104 |
Q |
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| T |
41460245 |
acagactatgacaaaaatgagccaatcattcatagcagttatacaaaagtacacgcctcgctaccttcccttcccagttacttttactagttacaaccac |
41460146 |
T |
|
| Q |
105 |
ttgatagaactcgtattacattcgttattatttgtcgctggacatcggcaatctcaggtagaaatgttaagagaagcttggttctaaataatattagcta |
204 |
Q |
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|||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41460145 |
ttgacagaactcgtattacactcgatattatttgtcgctggacatcggcaatctcaggtagaaatgttaagagaagcttggttctaaataatattagcta |
41460046 |
T |
|
| Q |
205 |
cagaggtgcctgtattcatg |
224 |
Q |
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|||||||||||||||||||| |
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| T |
41460045 |
cagaggtgcctgtattcatg |
41460026 |
T |
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