View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21315_low_22 (Length: 219)

Name: NF21315_low_22
Description: NF21315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21315_low_22
NF21315_low_22
[»] scaffold0022 (2 HSPs)
scaffold0022 (16-201)||(44057-44242)
scaffold0022 (16-201)||(77778-77963)
[»] scaffold0127 (1 HSPs)
scaffold0127 (47-197)||(30107-30257)
[»] chr1 (21 HSPs)
chr1 (47-197)||(41404078-41404228)
chr1 (60-198)||(15581575-15581713)
chr1 (58-197)||(42365891-42366031)
chr1 (46-171)||(48046434-48046559)
chr1 (49-198)||(42934225-42934377)
chr1 (92-201)||(16302721-16302830)
chr1 (46-197)||(7741115-7741267)
chr1 (53-197)||(34969790-34969928)
chr1 (119-197)||(50678176-50678254)
chr1 (41-163)||(39793621-39793743)
chr1 (73-200)||(42117145-42117272)
chr1 (119-197)||(49764907-49764985)
chr1 (125-198)||(23473768-23473841)
chr1 (122-198)||(19551222-19551298)
chr1 (72-197)||(50108993-50109120)
chr1 (73-200)||(49741322-49741449)
chr1 (58-98)||(50678132-50678172)
chr1 (123-201)||(50139607-50139685)
chr1 (59-90)||(16302661-16302692)
chr1 (47-80)||(7521247-7521280)
chr1 (155-200)||(38761094-38761139)
[»] chr4 (14 HSPs)
chr4 (41-198)||(46944055-46944212)
chr4 (47-197)||(50859177-50859327)
chr4 (46-201)||(35292051-35292206)
chr4 (61-201)||(31227704-31227843)
chr4 (49-198)||(21263553-21263703)
chr4 (46-195)||(41223629-41223779)
chr4 (58-198)||(22405045-22405186)
chr4 (47-197)||(41809861-41810016)
chr4 (48-198)||(35033787-35033937)
chr4 (32-198)||(4292597-4292760)
chr4 (112-201)||(3121234-3121323)
chr4 (58-198)||(48084686-48084831)
chr4 (73-200)||(26861354-26861481)
chr4 (159-198)||(4342109-4342148)
[»] chr3 (16 HSPs)
chr3 (58-201)||(39439840-39439983)
chr3 (58-197)||(27011191-27011330)
chr3 (49-198)||(42029255-42029405)
chr3 (48-198)||(25045381-25045531)
chr3 (32-198)||(23420235-23420404)
chr3 (48-160)||(32278405-32278517)
chr3 (83-198)||(23466703-23466820)
chr3 (67-198)||(25909351-25909482)
chr3 (58-198)||(29765199-29765338)
chr3 (73-200)||(14567851-14567978)
chr3 (63-197)||(24374193-24374317)
chr3 (76-198)||(2230101-2230218)
chr3 (129-199)||(40026083-40026153)
chr3 (58-114)||(40024830-40024886)
chr3 (67-134)||(44713298-44713364)
chr3 (73-200)||(30813293-30813421)
[»] chr5 (13 HSPs)
chr5 (46-201)||(11617240-11617395)
chr5 (49-201)||(4943533-4943686)
chr5 (48-198)||(30084909-30085059)
chr5 (47-197)||(9159446-9159596)
chr5 (92-198)||(7505998-7506104)
chr5 (48-160)||(5247863-5247975)
chr5 (58-170)||(29293200-29293311)
chr5 (73-200)||(32233010-32233137)
chr5 (47-149)||(31933464-31933565)
chr5 (132-197)||(8961656-8961721)
chr5 (72-169)||(13191724-13191821)
chr5 (132-197)||(30699526-30699591)
chr5 (72-112)||(6390563-6390603)
[»] chr7 (8 HSPs)
chr7 (58-197)||(23417196-23417335)
chr7 (47-200)||(261718-261870)
chr7 (47-198)||(12633428-12633587)
chr7 (58-194)||(19625430-19625566)
chr7 (73-197)||(36657597-36657722)
chr7 (72-197)||(29428919-29429044)
chr7 (47-141)||(35759799-35759893)
chr7 (128-197)||(5925181-5925250)
[»] chr2 (11 HSPs)
chr2 (49-198)||(28219027-28219177)
chr2 (93-198)||(7444692-7444797)
chr2 (46-201)||(10354261-10354416)
chr2 (48-198)||(28199184-28199334)
chr2 (59-196)||(44246347-44246479)
chr2 (47-198)||(1499191-1499343)
chr2 (47-171)||(17999917-18000040)
chr2 (150-198)||(6476830-6476878)
chr2 (41-88)||(6479307-6479354)
chr2 (72-169)||(20717593-20717690)
chr2 (132-197)||(38022979-38023044)
[»] chr8 (14 HSPs)
chr8 (46-195)||(34924709-34924859)
chr8 (46-197)||(38679751-38679901)
chr8 (46-201)||(42025314-42025473)
chr8 (46-195)||(14112305-14112456)
chr8 (47-193)||(28873679-28873829)
chr8 (32-198)||(30800191-30800357)
chr8 (73-200)||(11354775-11354902)
chr8 (123-201)||(29844244-29844322)
chr8 (73-200)||(24944997-24945123)
chr8 (123-197)||(20989717-20989791)
chr8 (48-177)||(5358200-5358329)
chr8 (72-169)||(22531293-22531390)
chr8 (72-169)||(22535978-22536075)
chr8 (72-169)||(25993899-25993996)
[»] scaffold0039 (1 HSPs)
scaffold0039 (46-195)||(56928-57077)
[»] scaffold0110 (1 HSPs)
scaffold0110 (58-197)||(38553-38687)
[»] scaffold0224 (1 HSPs)
scaffold0224 (49-198)||(12394-12546)
[»] scaffold0227 (1 HSPs)
scaffold0227 (119-198)||(232-311)
[»] chr6 (6 HSPs)
chr6 (68-198)||(19694550-19694680)
chr6 (121-200)||(7365097-7365176)
chr6 (67-149)||(10871282-10871364)
chr6 (125-200)||(29063577-29063652)
chr6 (125-200)||(29118431-29118506)
chr6 (72-168)||(33091175-33091271)
[»] scaffold0011 (1 HSPs)
scaffold0011 (123-201)||(9265-9343)
[»] scaffold0097 (1 HSPs)
scaffold0097 (72-169)||(21430-21527)


Alignment Details
Target: scaffold0022 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 44057 - 44242
Alignment:
Q  16 atgaagttggggaattaaagtaggaacaatgttgtaattgtcttattaatgtgttccattccatttgatacaccccaaattggggggaatggaaaattgg 115  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||| |  ||||| |||||||||||||||||||||||||    
T  44057 atgaagttggggaatgaaagtagggacaatgttgtaattgtcttattaatgtgtttcattccattgggaacacctcaaattggggggaatggaaaattgg 44156  T
Q  116 ttaaatgggtggtattggatggaatgggttccatcacactccattccattccattcattttttacaaaaccaaacaatggaatatg 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44157 ttaaatgggtggtattggatggaatgggttccatcacactccattccattccattcattttttacaaaaccaaacaatggaatatg 44242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 77778 - 77963
Alignment:
Q  16 atgaagttggggaattaaagtaggaacaatgttgtaattgtcttattaatgtgttccattccatttgatacaccccaaattggggggaatggaaaattgg 115  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||| |  ||||| |||||||||||||||||||||||||    
T  77778 atgaagttggggaatgaaagtagggacaatgttgtaattgtcttattaatgtgtttcattccattgggaacacctcaaattggggggaatggaaaattgg 77877  T
Q  116 ttaaatgggtggtattggatggaatgggttccatcacactccattccattccattcattttttacaaaaccaaacaatggaatatg 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  77878 ttaaatgggtggtattggatggaatgggttccatcacactccattccattccattcattttttacaaaaccaaacaatggaatatg 77963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 111; Significance: 3e-56; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 47 - 197
Target Start/End: Original strand, 30107 - 30257
Alignment:
Q  47 ttgtaattgtcttattaatgtgttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttc 146  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| | |||| |||||||  ||||||||||||||    
T  30107 ttgtaattgtcttattaatgtgttccatttcattggatacaccccaaattggggggaatggaaaattggatgaatgagtggtatatgatggaatgggttc 30206  T
Q  147 catcacactccattccattccattcattttttacaaaaccaaacaatggaa 197  Q
    ||||||| ||||||||||||||||  |||||||||||||||||||||||||    
T  30207 catcacattccattccattccattatttttttacaaaaccaaacaatggaa 30257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 3e-56; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 47 - 197
Target Start/End: Complemental strand, 41404228 - 41404078
Alignment:
Q  47 ttgtaattgtcttattaatgtgttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttc 146  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| | |||| |||||||  ||||||||||||||    
T  41404228 ttgtaattgtcttattaatgtgttccatttcattggatacaccccaaattggggggaatggaaaattggatgaatgagtggtatatgatggaatgggttc 41404129  T
Q  147 catcacactccattccattccattcattttttacaaaaccaaacaatggaa 197  Q
    ||||||| ||||||||||||||||  |||||||||||||||||||||||||    
T  41404128 catcacattccattccattccattatttttttacaaaaccaaacaatggaa 41404078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 60 - 198
Target Start/End: Complemental strand, 15581713 - 15581575
Alignment:
Q  60 attaatgtgttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttccatcacactccat 159  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||   ||||| |||||||||||||||||||||||||||||||||||    
T  15581713 attattgtgttccattccattggatacaccccaaattggggggaatggaaaattgggagaatggatggtattggatggaatgggttccatcacactccat 15581614  T
Q  160 tccattccattcattttttacaaaaccaaacaatggaat 198  Q
    |||||||||||  ||||||||||||||||||||||||||    
T  15581613 tccattccatttcttttttacaaaaccaaacaatggaat 15581575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 58 - 197
Target Start/End: Complemental strand, 42366031 - 42365891
Alignment:
Q  58 ttattaatgtgttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttccatcacactcc 157  Q
    ||||||||||||||||||||||| ||||||||||||||| |  |||||| ||||||||   ||||  |||||||||||||||||||||||||||||||||    
T  42366031 ttattaatgtgttccattccattggatacaccccaaattagatggaatgaaaaattggaagaatgaatggtattggatggaatgggttccatcacactcc 42365932  T
Q  158 attccattccattcattttttacaaaacc-aaacaatggaa 197  Q
    |||||||||||||||||||||| |||||| |||||||||||    
T  42365931 attccattccattcattttttataaaaccaaaacaatggaa 42365891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 46 - 171
Target Start/End: Complemental strand, 48046559 - 48046434
Alignment:
Q  46 gttgtaattgtcttattaatgtgttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggtt 145  Q
    ||||| ||||| ||||| |||| |||||||||||| ||||||||||||||| ||||||||| ||| |||| | ||||||||||||||||||||||| |||    
T  48046559 gttgtcattgtattatttatgtattccattccattggatacaccccaaattagggggaatgaaaatttggcttaatgggtggtattggatggaatgagtt 48046460  T
Q  146 ccatcacactccattccattccattc 171  Q
    ||||||||||||||||||||||||||    
T  48046459 ccatcacactccattccattccattc 48046434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 49 - 198
Target Start/End: Complemental strand, 42934377 - 42934225
Alignment:
Q  49 gtaattgtcttattaatgtgttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttcca 148  Q
    |||||| | ||||| ||||||||||||| ||| |||||||| ||||||||  ||||||||||||||    |||| |||||||||||||||||||||||||    
T  42934377 gtaattatattattgatgtgttccattctattggatacacctcaaattggatggaatggaaaattgaaggaatgagtggtattggatggaatgggttcca 42934278  T
Q  149 tcacactccattccattcc---attcattttttacaaaaccaaacaatggaat 198  Q
    |||||||||||||||||||   |||  ||||||||||||||||||||||||||    
T  42934277 tcacactccattccattccattattttttttttacaaaaccaaacaatggaat 42934225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 92 - 201
Target Start/End: Original strand, 16302721 - 16302830
Alignment:
Q  92 aaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttccatcacactccattccattccattcattttttacaaaaccaaaca 191  Q
    ||||||||||||||| |||| | | ||||||| ||  ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  16302721 aaattggggggaatgaaaaaattgataaatggatgacattggatggaatgagttccatcacactccattccattccattccttttttacaaaaccaaaca 16302820  T
Q  192 atggaatatg 201  Q
    ||||||||||    
T  16302821 atggaatatg 16302830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 46 - 197
Target Start/End: Complemental strand, 7741267 - 7741115
Alignment:
Q  46 gttgtaattgtcttattaatgtgttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtgg-tattggatggaatgggt 144  Q
    ||||| ||||| |||| ||||| ||||||| |||| ||| |||  ||||||||  | |||| ||| |||||||||||| ||| ||||||| |||||||||    
T  7741267 gttgtgattgtattatcaatgttttccatttcattggattcacttcaaattggatgaaatgaaaatttggttaaatggatgggtattggaaggaatgggt 7741168  T
Q  145 tccatcacactccattccattccattcattttttacaaaaccaaacaatggaa 197  Q
    |||||||||||| ||||||||||||| |||||||||||||| |||||||||||    
T  7741167 tccatcacactctattccattccatttattttttacaaaactaaacaatggaa 7741115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 53 - 197
Target Start/End: Complemental strand, 34969928 - 34969790
Alignment:
Q  53 ttgtcttattaatgtgttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttccatcac 152  Q
    |||| |||||||||| ||| |||||||||||||||||||||||||| || |||| ||| |||  | |||| |||||||||||||||||||||||||||||    
T  34969928 ttgtattattaatgtattctattccatttgatacaccccaaattggagg-aatgaaaatttgacttaatgagtggtattggatggaatgggttccatcac 34969830  T
Q  153 actccattccattccattcattttttacaaaaccaaacaatggaa 197  Q
    ||     | ||||||||||||||||||||||| ||||||||||||    
T  34969829 ac-----ttcattccattcattttttacaaaatcaaacaatggaa 34969790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 119 - 197
Target Start/End: Original strand, 50678176 - 50678254
Alignment:
Q  119 aatgggtggtattggatggaatgggttccatcacactccattccattccattcattttttacaaaaccaaacaatggaa 197  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  50678176 aatgagtggtattggatagaatgggttccatcacactccattccattccattccttttttacaaaaccaaacaatggaa 50678254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 41 - 163
Target Start/End: Complemental strand, 39793743 - 39793621
Alignment:
Q  41 acaatgttgtaattgtcttattaatgtgttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaat 140  Q
    |||||||||||||||| |||||||||||||||||| |||| ||||||||| ||||| |  |||||| |||||||  |||||| ||  |||||||||||||    
T  39793743 acaatgttgtaattgtattattaatgtgttccatttcattggatacaccctaaattagaaggaatgaaaaattgactaaatgagttttattggatggaat 39793644  T
Q  141 gggttccatcacactccattcca 163  Q
    |  |||||| ||||| |||||||    
T  39793643 gacttccattacacttcattcca 39793621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 73 - 200
Target Start/End: Original strand, 42117145 - 42117272
Alignment:
Q  73 attccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttccatcacactccattccattccattca 172  Q
    |||||||| |||||||||||| |||| ||||||| |||||||      ||||||||||||||||||||| |||||||   | ||||| ||| ||||||||    
T  42117145 attccattggatacaccccaatttggagggaatgaaaaattgaaggtttgggtggtattggatggaatgagttccattgtattccatcccactccattca 42117244  T
Q  173 ttttttacaaaaccaaacaatggaatat 200  Q
     ||||| |||| ||||||||||||||||    
T  42117245 ctttttgcaaatccaaacaatggaatat 42117272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 119 - 197
Target Start/End: Complemental strand, 49764985 - 49764907
Alignment:
Q  119 aatgggtggtattggatggaatgggttccatcacactccattccattccattcattttttacaaaaccaaacaatggaa 197  Q
    |||| ||||||||||||| |||| ||||||||| |||||||||||| | ||||||||||| ||||| ||||||||||||    
T  49764985 aatgagtggtattggatgaaatgagttccatcatactccattccatcctattcattttttgcaaaatcaaacaatggaa 49764907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 125 - 198
Target Start/End: Complemental strand, 23473841 - 23473768
Alignment:
Q  125 tggtattggatggaatgggttccatcacactccattccattccattcattttttacaaaaccaaacaatggaat 198  Q
    |||||| ||||||||||| ||||||||   |||||||||||||||||| |||||||| | ||||||||||||||    
T  23473841 tggtatgggatggaatggattccatcatgttccattccattccattcaatttttacacatccaaacaatggaat 23473768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 19551222 - 19551298
Alignment:
Q  122 gggtggtattggatggaatgggttccatcacactccattccattccattcattttttacaaaaccaaacaatggaat 198  Q
    |||||||||||||||||||| |||||||||   || ||| |||||||||  |||||||||||||||||| |||||||    
T  19551222 gggtggtattggatggaatgagttccatcatgttctatttcattccattacttttttacaaaaccaaacgatggaat 19551298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 197
Target Start/End: Original strand, 50108993 - 50109120
Alignment:
Q  72 cattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtatt--ggatggaatgggttccatcacactccattccattccat 169  Q
    |||||||||  ||||||||||||||| ||| ||||  |||||||   |  |||||||||   ||||||||||| ||||||||   ||||||||| |||||    
T  50108993 cattccattgcatacaccccaaattgagggaaatgataaattggaagagagggtggtatatgggatggaatggattccatcatgttccattccactccat 50109092  T
Q  170 tcattttttacaaaaccaaacaatggaa 197  Q
    |||||| ||||||| |||||||||||||    
T  50109093 tcatttcttacaaatccaaacaatggaa 50109120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 49741449 - 49741322
Alignment:
Q  73 attccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttccatcacactccattccattccattca 172  Q
    |||||||| |||||||||||| |||  ||||||| |||||||      ||||||||||||||||||||| |||||||   | ||||| ||| |||||||     
T  49741449 attccattggatacaccccaatttgaagggaatgaaaaattgaaggtttgggtggtattggatggaatgagttccattgtattccatcccactccattcg 49741350  T
Q  173 ttttttacaaaaccaaacaatggaatat 200  Q
     ||||| |||| ||||||||||||||||    
T  49741349 ctttttgcaaatccaaacaatggaatat 49741322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 50678132 - 50678172
Alignment:
Q  58 ttattaatgtgttccattccatttgatacaccccaaattgg 98  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  50678132 ttattaatgtgttccattccattggatacaccccaaattgg 50678172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 201
Target Start/End: Original strand, 50139607 - 50139685
Alignment:
Q  123 ggtggtattggatggaatgggttccatcacactccattccattccattcattttttacaaaaccaaacaatggaatatg 201  Q
    |||||||| ||||||||||| |||||||  | ||||||||| |||||| |  ||||||||| |||||||| ||||||||    
T  50139607 ggtggtataggatggaatggattccatcttattccattccactccattaaaattttacaaatccaaacaacggaatatg 50139685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 90
Target Start/End: Original strand, 16302661 - 16302692
Alignment:
Q  59 tattaatgtgttccattccatttgatacaccc 90  Q
    ||||||||||||||||||||||||||||||||    
T  16302661 tattaatgtgttccattccatttgatacaccc 16302692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 80
Target Start/End: Complemental strand, 7521280 - 7521247
Alignment:
Q  47 ttgtaattgtcttattaatgtgttccattccatt 80  Q
    |||||||||| |||||||||||||||||||||||    
T  7521280 ttgtaattgtgttattaatgtgttccattccatt 7521247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 38761094 - 38761139
Alignment:
Q  155 tccattccattccattcattttttacaaaaccaaacaatggaatat 200  Q
    ||||||||| ||||||||||||| ||||| ||||||||| ||||||    
T  38761094 tccattccactccattcatttttaacaaatccaaacaatagaatat 38761139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 1e-55; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 41 - 198
Target Start/End: Complemental strand, 46944212 - 46944055
Alignment:
Q  41 acaatgttgtaattgtcttattaatgtgttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaat 140  Q
    |||||||||||||| | ||||||||||| | ||||||||| |||||||||||||||||| ||||||||||||||   ||||| |||||||||||||||||    
T  46944212 acaatgttgtaattatattattaatgtgctacattccattggatacaccccaaattgggtggaatggaaaattgacaaaatgagtggtattggatggaat 46944113  T
Q  141 gggttccatcacactccattccattccattcattttttacaaaaccaaacaatggaat 198  Q
    | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  46944112 gagttccatcacactccattccattccattcattttttacataaccaaacaatggaat 46944055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 47 - 197
Target Start/End: Complemental strand, 50859327 - 50859177
Alignment:
Q  47 ttgtaattgtcttattaatgtgttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttc 146  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||  || |||| |||||||||||||||||||||||||  |||    
T  50859327 ttgtaattgtattattaatgtgttccattccattggatacaccccaaattgggaggaatgacaatttggctaaatgggtggtattggatggaatgaattc 50859228  T
Q  147 catcacactccattccattccattcattttttacaaaaccaaacaatggaa 197  Q
    |||||||||||||||||| ||| || |||||||||||||||||||||||||    
T  50859227 catcacactccattccatcccactctttttttacaaaaccaaacaatggaa 50859177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 46 - 201
Target Start/End: Complemental strand, 35292206 - 35292051
Alignment:
Q  46 gttgtaattgtcttattaatgtgttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggtt 145  Q
    ||||| ||||| ||||| |||| |||||||||||| ||||||||||||||||| || |||| ||| |||| | ||||||||||||||||| ||||| |||    
T  35292206 gttgtcattgtattatttatgtattccattccattggatacaccccaaattggaggaaatgaaaatttggcttaatgggtggtattggattgaatgagtt 35292107  T
Q  146 ccatcacactccattccattccattcattttttacaaaaccaaacaatggaatatg 201  Q
     ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  35292106 acatcacactccattccattccattccttttttgcaaaaccaaacaatggaatatg 35292051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 61 - 201
Target Start/End: Complemental strand, 31227843 - 31227704
Alignment:
Q  61 ttaatgtgttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttccatcacactccatt 160  Q
    ||||||| |||||||||||| ||||||| |||| ||||||| |||| ||||||||||||||| ||||||||||||||||||  |||||||||||| ||||    
T  31227843 ttaatgtattccattccattggatacactccaatttggggg-aatgaaaaattggttaaatgagtggtattggatggaatgatttccatcacacttcatt 31227745  T
Q  161 ccattccattcattttttacaaaaccaaacaatggaatatg 201  Q
    ||||||||||||||||||||||||||||||| || ||||||    
T  31227744 ccattccattcattttttacaaaaccaaacattgaaatatg 31227704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 49 - 198
Target Start/End: Original strand, 21263553 - 21263703
Alignment:
Q  49 gtaattgtcttattaatgtg-ttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttcc 147  Q
    |||||| | ||||||||||| || ||||||||| |||||||||||||||||  ||||||||||||||    |||| ||||||||||||||||||||||||    
T  21263553 gtaattatattattaatgtggtttcattccattcgatacaccccaaattggatggaatggaaaattgaaggaatgagtggtattggatggaatgggttcc 21263652  T
Q  148 atcacactccattccattccattcattttttacaaaaccaaacaatggaat 198  Q
    |||||||||||| ||||||||| | ||||||||||||||||||||||||||    
T  21263653 atcacactccatcccattccatcccttttttacaaaaccaaacaatggaat 21263703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 46 - 195
Target Start/End: Original strand, 41223629 - 41223779
Alignment:
Q  46 gttgtaattgtcttattaatgtgttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtatt-ggatggaatgggt 144  Q
    ||||||||| | ||||||  ||||||||||||||| |||||  ||||| |||||||||||| |||| ||  |||||| |||||||| |||||||||||||    
T  41223629 gttgtaattttattattagagtgttccattccattggatacctcccaatttggggggaatgaaaaaatgactaaatgagtggtatttggatggaatgggt 41223728  T
Q  145 tccatcacactccattccattccattcattttttacaaaaccaaacaatgg 195  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  41223729 tccatcacactccattccattccattcattttttacataaccaaacaatgg 41223779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 58 - 198
Target Start/End: Complemental strand, 22405186 - 22405045
Alignment:
Q  58 ttattaatgtg-ttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttccatcacactc 156  Q
    ||||||||||| |||||||||||| ||||||| |||||||||| ||||||||||||||    ||||  ||||||||||||||||| ||||||||||||||    
T  22405186 ttattaatgtggttccattccattggatacactccaaattgggtggaatggaaaattgaaggaatgattggtattggatggaatgagttccatcacactc 22405087  T
Q  157 cattccattccattcattttttacaaaaccaaacaatggaat 198  Q
    ||||||||||||| | ||||||||||||||||||||||||||    
T  22405086 cattccattccatcctttttttacaaaaccaaacaatggaat 22405045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 47 - 197
Target Start/End: Original strand, 41809861 - 41810016
Alignment:
Q  47 ttgtaattgtcttattaatgtgttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttc 146  Q
    |||||||||||||||||||| |||||||||||||  ||||| ||||||||||||||||||||||||||| | |||| |||||||   |||||||||||||    
T  41809861 ttgtaattgtcttattaatgcgttccattccattgaatacatcccaaattggggggaatggaaaattggatgaatgagtggtatatcatggaatgggttc 41809960  T
Q  147 catcacactccattccattccattc-----attttttacaaaaccaaacaatggaa 197  Q
    ||||||| |||||||||||| ||||      |||||||||||||||||||||||||    
T  41809961 catcacattccattccattcaattccactatttttttacaaaaccaaacaatggaa 41810016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 48 - 198
Target Start/End: Original strand, 35033787 - 35033937
Alignment:
Q  48 tgtaattgtcttattaatgtgttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttcc 147  Q
    ||||||||  ||||||||||||||||||||||| |||||| || || ||||| ||||||||||||||| | |||| |||||||||||||||||| |||||    
T  35033787 tgtaattgggttattaatgtgttccattccattggatacatcctaatttgggaggaatggaaaattggatgaatgagtggtattggatggaatgagttcc 35033886  T
Q  148 atcacactccattccattccattcattttttacaaaaccaaacaatggaat 198  Q
    |||||| ||||||||||||||||    |||| |||||||||||||||||||    
T  35033887 atcacattccattccattccattacaattttgcaaaaccaaacaatggaat 35033937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 32 - 198
Target Start/End: Original strand, 4292597 - 4292760
Alignment:
Q  32 aaagtaggaacaatgttgtaattgtcttattaatgtgttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtatt 131  Q
    |||||||| ||||  |||||||||| |||||||||||||  |||||||| |||||   |||||||| ||||||||||||| | ||||||   ||||||||    
T  4292597 aaagtagggacaaaattgtaattgtattattaatgtgttatattccattggatac---ccaaattgaggggaatggaaaactagttaaaatagtggtatt 4292693  T
Q  132 ggatggaatgggttccatcacactccattccattccattcattttttacaaaaccaaacaatggaat 198  Q
    |||||||||| |||||||||||| |||||||||||||||  |||||| |||||||||||||||||||    
T  4292694 ggatggaatgagttccatcacacaccattccattccattacttttttgcaaaaccaaacaatggaat 4292760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 112 - 201
Target Start/End: Complemental strand, 3121323 - 3121234
Alignment:
Q  112 ttggttaaatgggtggtattggatggaatgggttccatcacactccattccattccattcattttttacaaaaccaaacaatggaatatg 201  Q
    |||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  3121323 ttggtttaatggatggtattggatggaatgagttccatcacactccattccattccattctttttttgcaaaaccaaacaatggaatatg 3121234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 58 - 198
Target Start/End: Complemental strand, 48084831 - 48084686
Alignment:
Q  58 ttattaatgtgttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttccatcacactcc 157  Q
    |||||| ||| |||||||||||   ||||  |||||||||||||||||| ||||||||||||||| ||||||||||||| |||| ||||||| | |||||    
T  48084831 ttattattgtattccattccatcgtatacctcccaaattggggggaatgaaaaattggttaaatgagtggtattggatgaaatgagttccataagactcc 48084732  T
Q  158 attccattccattc-----attttttacaaaaccaaacaatggaat 198  Q
    ||||||||| ||||     |||||||||||||||||||||||||||    
T  48084731 attccattcaattctattaattttttacaaaaccaaacaatggaat 48084686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 73 - 200
Target Start/End: Original strand, 26861354 - 26861481
Alignment:
Q  73 attccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttccatcacactccattccattccattca 172  Q
    |||||||| |||||||||||| |||| ||||||| |||||||      ||||||||||||||||||||| |||||||   | ||||| ||| ||||||||    
T  26861354 attccattggatacaccccaatttggagggaatgaaaaattgaaggtttgggtggtattggatggaatgagttccattgtattccatcccactccattca 26861453  T
Q  173 ttttttacaaaaccaaacaatggaatat 200  Q
     ||||| |||| ||||||||||||||||    
T  26861454 ctttttgcaaatccaaacaatggaatat 26861481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 198
Target Start/End: Original strand, 4342109 - 4342148
Alignment:
Q  159 ttccattccattcattttttacaaaaccaaacaatggaat 198  Q
    ||||||||||||  ||||||||||||||||||||||||||    
T  4342109 ttccattccattacttttttacaaaaccaaacaatggaat 4342148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 58 - 201
Target Start/End: Original strand, 39439840 - 39439983
Alignment:
Q  58 ttattaatgtgttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttccatcacactcc 157  Q
    ||||| |||| |||||||||||| ||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||| |||||||||||||||    
T  39439840 ttatttatgtattccattccattggatacaccccaaattggggggaatgaaaatttggtttaatgggtggtattggatggaatgagttccatcacactcc 39439939  T
Q  158 attccattccattcattttttacaaaaccaaacaatggaatatg 201  Q
    |||||||||||||| |||||| ||||||||||||||||||||||    
T  39439940 attccattccattctttttttgcaaaaccaaacaatggaatatg 39439983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 58 - 197
Target Start/End: Complemental strand, 27011330 - 27011191
Alignment:
Q  58 ttattaatgtgttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttccatcacactcc 157  Q
    ||||||||||||| ||||||||| |||||||||||||||||  |||||| ||||||||   |||| ||||||||||||||||||||||||||||||||||    
T  27011330 ttattaatgtgtttcattccattggatacaccccaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactcc 27011231  T
Q  158 attccattccattcattttttacaaaaccaaacaatggaa 197  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  27011230 attccattccattccttttttacaaaaccaaacaatggaa 27011191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 49 - 198
Target Start/End: Original strand, 42029255 - 42029405
Alignment:
Q  49 gtaattgtcttattaatgtg-ttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttcc 147  Q
    |||||| | ||||||||||| |||||||||||| |||||||||||||||||| |||||| |||||||    |||| ||||||||||||||||||||||||    
T  42029255 gtaattatattattaatgtggttccattccattggatacaccccaaattgggtggaatgaaaaattgaaggaatgagtggtattggatggaatgggttcc 42029354  T
Q  148 atcacactccattccattccattcattttttacaaaaccaaacaatggaat 198  Q
    |||| ||||||||||||||||| | ||||||||||||||||||||||||||    
T  42029355 atcatactccattccattccatcccttttttacaaaaccaaacaatggaat 42029405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 48 - 198
Target Start/End: Complemental strand, 25045531 - 25045381
Alignment:
Q  48 tgtaattgtcttattaatgtgttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttcc 147  Q
    ||||||||  ||||||||||||||||||||||| ||||||| |||| ||||| ||||||||||||||| | |||| |||||||||||||||||| |||||    
T  25045531 tgtaattgagttattaatgtgttccattccattggatacacaccaatttgggaggaatggaaaattggatgaatgagtggtattggatggaatgagttcc 25045432  T
Q  148 atcacactccattccattccattcattttttacaaaaccaaacaatggaat 198  Q
    |||||| ||||||||||||||||    |||| |||||||||||||||||||    
T  25045431 atcacattccattccattccattacaattttgcaaaaccaaacaatggaat 25045381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 32 - 198
Target Start/End: Complemental strand, 23420404 - 23420235
Alignment:
Q  32 aaagtaggaacaatgttgtaattgtcttattaatgtgttccattccatttgatacaccccaaattggggggaat-ggaaaattggttaaatgggtggtat 130  Q
    |||||||| ||||  |||||||||| ||||||||||||| |||| ||||  |||||||||| | |||| ||||| |||||||||||||||| ||||||||    
T  23420404 aaagtagggacaaaattgtaattgtgttattaatgtgtttcatttcattgcatacaccccacaatgggaggaattggaaaattggttaaataggtggtat 23420305  T
Q  131 tggatggaatgggttccatcacactccattccattccattc--attttttacaaaaccaaacaatggaat 198  Q
    |||||| |||| ||||||| |||||||| ||||||| ||||   ||||||||||||||||||||| ||||    
T  23420304 tggatgtaatgagttccattacactccactccattctattccttttttttacaaaaccaaacaatagaat 23420235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 48 - 160
Target Start/End: Complemental strand, 32278517 - 32278405
Alignment:
Q  48 tgtaattgtcttattaatgtgttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttcc 147  Q
    ||||||||  |||||||||||||| |||||||| |||||||||||| ||||| ||||||||||||||| | |||| |||||||||||||||||| |||||    
T  32278517 tgtaattgagttattaatgtgttcaattccattggatacaccccaatttgggaggaatggaaaattggatgaatgagtggtattggatggaatgagttcc 32278418  T
Q  148 atcacactccatt 160  Q
    |||||| ||||||    
T  32278417 atcacattccatt 32278405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 83 - 198
Target Start/End: Complemental strand, 23466820 - 23466703
Alignment:
Q  83 atacaccccaaattggggggaa-tggaaaattggttaaatgggtggtattggatggaatgggttccatcacactccattccattccatt-cattttttac 180  Q
    ||||||||||||||||| |||| ||||||||||||||||| |||||||||||||| |||| ||||||| ||||| |||||||||| ||| | ||||||||    
T  23466820 atacaccccaaattgggaggaactggaaaattggttaaataggtggtattggatgcaatgagttccattacactacattccattctattcctttttttac 23466721  T
Q  181 aaaaccaaacaatggaat 198  Q
    ||||||||||||| ||||    
T  23466720 aaaaccaaacaatagaat 23466703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 67 - 198
Target Start/End: Complemental strand, 25909482 - 25909351
Alignment:
Q  67 tgttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttccatcacactccattccattc 166  Q
    ||||||||| ||||  |||||||||||||||||| ||||| ||||||||   | ||||||||||||||||||||| ||||||| | | | |||| |||||    
T  25909482 tgttccatttcattgcatacaccccaaattggggagaatgaaaaattggaatagtgggtggtattggatggaatgagttccattatatttcatttcattc 25909383  T
Q  167 cattcattttttacaaaaccaaacaatggaat 198  Q
    |||||| || ||||||||||||||||||||||    
T  25909382 cattcacttattacaaaaccaaacaatggaat 25909351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 58 - 198
Target Start/End: Original strand, 29765199 - 29765338
Alignment:
Q  58 ttattaatgtgttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttccatcacactcc 157  Q
    ||||| ||| |||| ||||||||  |||||||||||||| |||| |||| ||| ||||  |||  |||||||||||||||||| | ||||||||  ||||    
T  29765199 ttatttatgggttcgattccattgcatacaccccaaatttggggtaatgaaaatttggagaaaatggtggtattggatggaattgattccatcatgctcc 29765298  T
Q  158 attccattccattcattttttacaaaaccaaacaatggaat 198  Q
    ||||||||||||| || ||||||||| ||||||||||||||    
T  29765299 attccattccatt-atgttttacaaagccaaacaatggaat 29765338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 14567978 - 14567851
Alignment:
Q  73 attccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttccatcacactccattccattccattca 172  Q
    |||||||| ||||||||||||||||||||||||| |||||||      ||| ||||||||||||||||| |||||||   | ||||||||| ||||||||    
T  14567978 attccattggatacaccccaaattggggggaatgaaaaattgaaggtttggatggtattggatggaatgagttccattgtattccattccactccattca 14567879  T
Q  173 ttttttacaaaaccaaacaatggaatat 200  Q
     ||||| |||| ||||||||||||||||    
T  14567878 ctttttgcaaatccaaacaatggaatat 14567851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 63 - 197
Target Start/End: Original strand, 24374193 - 24374317
Alignment:
Q  63 aatgtgttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttccatcacactccattcc 162  Q
    |||||||||||||||  | ||||||||| |||||||  |||||| |||||||| ||| |||||||||||||||||||||| | ||||| |||||||||||    
T  24374193 aatgtgttccattccgctcgatacaccctaaattggatggaatgaaaaattggctaagtgggtggtattggatggaatggataccatcccactccattcc 24374292  T
Q  163 attccattcattttttacaaaaccaaacaatggaa 197  Q
              |||||||||||||||||||||||||    
T  24374293 ----------ttttttacaaaaccaaacaatggaa 24374317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 76 - 198
Target Start/End: Original strand, 2230101 - 2230218
Alignment:
Q  76 ccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttccatcacactccattccattccattcattt 175  Q
    ||||| ||||||| |||||||| || ||||| |||||||  | ||||| |||||||||||| ||||||||||||||     ||||||||| |||||||||    
T  2230101 ccattggatacactccaaattgaggagaatgaaaaattgagtgaatggatggtattggatgcaatgggttccatca-----cattccatttcattcattt 2230195  T
Q  176 tttacaaaaccaaacaatggaat 198  Q
    |||||||||||||| || |||||    
T  2230196 tttacaaaaccaaataaaggaat 2230218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 129 - 199
Target Start/End: Original strand, 40026083 - 40026153
Alignment:
Q  129 attggatggaatgggttccatcacactccattccattccattcattttttacaaaaccaaacaatggaata 199  Q
    |||||||||||| |||||| ||||| |||||||||||| ||||||||||||||||| ||||||||||||||    
T  40026083 attggatggaataggttccttcacattccattccattctattcattttttacaaaatcaaacaatggaata 40026153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 40024830 - 40024886
Alignment:
Q  58 ttattaatgtgttccattccatttgatacaccccaaattggggggaatggaaaattg 114  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||    
T  40024830 ttattaatgtgttccattccattggatacaccccaaattgggaggaatgaaaaattg 40024886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 67 - 134
Target Start/End: Complemental strand, 44713364 - 44713298
Alignment:
Q  67 tgttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattgga 134  Q
    |||||||||||||| ||||||||||||||| |||| |||| ||||||||||||||| |||||||||||    
T  44713364 tgttccattccattagatacaccccaaatttgggg-aatgaaaaattggttaaatgagtggtattgga 44713298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 200
Target Start/End: Original strand, 30813293 - 30813421
Alignment:
Q  73 attccatttgatacaccccaaattggggggaatggaaaatt----ggttaaatgggtggtattggatggaatgggttccatcacactccattccattcca 168  Q
    |||||||| |||||||||||| |||||||||||| |||| |    ||||   | |||||||||||||| |||| | |||||   | ||||| ||| ||||    
T  30813293 attccattggatacaccccaatttggggggaatgaaaaaattgaaggtt---tcggtggtattggatgaaatgagatccattgtattccatcccactcca 30813389  T
Q  169 ttcattttttacaaaaccaaacaatggaatat 200  Q
    || |||||||||||| | ||||||||||||||    
T  30813390 ttaattttttacaaatctaaacaatggaatat 30813421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 1e-49; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 46 - 201
Target Start/End: Complemental strand, 11617395 - 11617240
Alignment:
Q  46 gttgtaattgtcttattaatgtgttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggtt 145  Q
    ||||| ||||| ||||| |||| |||||||||||| ||||||| | || |||||||||||| ||| |||| | ||||||||||||||||||||||| |||    
T  11617395 gttgtcattgtattatttatgtattccattccattggatacacactaatttggggggaatgaaaatttggcttaatgggtggtattggatggaatgagtt 11617296  T
Q  146 ccatcacactccattccattccattcattttttacaaaaccaaacaatggaatatg 201  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  11617295 ccatcacactccattccattccattcattttttgcaaaaccaaacaatggaatatg 11617240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 49 - 201
Target Start/End: Complemental strand, 4943686 - 4943533
Alignment:
Q  49 gtaattgtcttattaatgtg-ttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttcc 147  Q
    |||||| | ||||||||||| |||||||||||| || ||||||||||||||| ||||||||||||||    |||| ||||||||||||||||||||||||    
T  4943686 gtaattatattattaatgtggttccattccattggaaacaccccaaattgggtggaatggaaaattgaaggaatgagtggtattggatggaatgggttcc 4943587  T
Q  148 atcacactccattccattccattcattttttacaaaaccaaacaatggaatatg 201  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  4943586 atcacactccattccattccatcccttttttacaaaaccaaacaatggaatatg 4943533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 48 - 198
Target Start/End: Complemental strand, 30085059 - 30084909
Alignment:
Q  48 tgtaattgtcttattaatgtgttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttcc 147  Q
    ||||||||  ||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||| | |||| |||||||||||||||||| |||||    
T  30085059 tgtaattgagttattaatgtgttccattccattggatacaccccaatttgggaggaatggaaaattggatgaatgagtggtattggatggaatgagttcc 30084960  T
Q  148 atcacactccattccattccattcattttttacaaaaccaaacaatggaat 198  Q
    |||||| ||||||||||||||||    |||| |||||||||||||||||||    
T  30084959 atcacattccattccattccattacaattttgcaaaaccaaacaatggaat 30084909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 47 - 197
Target Start/End: Complemental strand, 9159596 - 9159446
Alignment:
Q  47 ttgtaattgtcttattaatgtgttccattccatttgat--acaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggt 144  Q
    |||||| ||| |||| |||||||||||||| ||| |||  ||||| |||||| |||||||||||| ||||| ||||||||||||||||||||||||||||    
T  9159596 ttgtaactgtattatcaatgtgttccattctattggatgcacacctcaaattagggggaatggaagattggataaatgggtggtattggatggaatgggt 9159497  T
Q  145 tccatcacactccattccattccattcattttttacaaaaccaaacaatggaa 197  Q
    ||||||||| |||||||| |||||||  |||||||||||||||||||||||||    
T  9159496 tccatcacattccattcctttccatt--ttttttacaaaaccaaacaatggaa 9159446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 92 - 198
Target Start/End: Original strand, 7505998 - 7506104
Alignment:
Q  92 aaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttccatcacactccattccattccattcattttttacaaaaccaaaca 191  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||| ||| ||||||||| ||||||||||||||||||||    
T  7505998 aaattggggggaatggaaaattggttaaatgagtggtattggatggaattgattccatcacactctatttcattccattaattttttacaaaaccaaaca 7506097  T
Q  192 atggaat 198  Q
    |||||||    
T  7506098 atggaat 7506104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 48 - 160
Target Start/End: Original strand, 5247863 - 5247975
Alignment:
Q  48 tgtaattgtcttattaatgtgttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttcc 147  Q
    ||||||||| ||||||||||||||||||| ||| | ||||||  |||||||  ||||||||||||||||| |||| |||||||||||| |||||||||||    
T  5247863 tgtaattgtattattaatgtgttccattctattgggtacaccttaaattggatggaatggaaaattggttgaatgagtggtattggattgaatgggttcc 5247962  T
Q  148 atcacactccatt 160  Q
    |||||| ||||||    
T  5247963 atcacattccatt 5247975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 58 - 170
Target Start/End: Complemental strand, 29293311 - 29293200
Alignment:
Q  58 ttattaatgtgttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttccatcacactcc 157  Q
    |||||||||| |||||||||| | ||||| ||||||||||||||||||| ||| ||| || ||||  ||| |||||||||| ||||||||||| ||||||    
T  29293311 ttattaatgtattccattccactggatac-ccccaaattggggggaatgaaaatttgatttaatgaatggcattggatggagtgggttccatcccactcc 29293213  T
Q  158 attccattccatt 170  Q
     ||||||||||||    
T  29293212 gttccattccatt 29293200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 32233137 - 32233010
Alignment:
Q  73 attccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttccatcacactccattccattccattca 172  Q
    |||||||| |||||||||||| |||| ||||||| |||||||      ||||||||||||||||||||| |||||||   | ||||||||| ||||||||    
T  32233137 attccattggatacaccccaatttggagggaatgaaaaattgaaggtttgggtggtattggatggaatgagttccattgtattccattccactccattca 32233038  T
Q  173 ttttttacaaaaccaaacaatggaatat 200  Q
     ||||| |||| ||||||||||||||||    
T  32233037 ctttttgcaaatccaaacaatggaatat 32233010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 47 - 149
Target Start/End: Original strand, 31933464 - 31933565
Alignment:
Q  47 ttgtaattgtcttattaatgtgttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttc 146  Q
    |||||||||| ||||||||||||| |||||||||  ||||||| |  |||  |||||||| ||||||| ||  |||  ||||||||||||||||| ||||    
T  31933464 ttgtaattgtattattaatgtgtttcattccattgaatacacctctgatt-aggggaatgaaaaattgattggatgaatggtattggatggaatgagttc 31933562  T
Q  147 cat 149  Q
    |||    
T  31933563 cat 31933565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 8961721 - 8961656
Alignment:
Q  132 ggatggaatgggttccatcacactccattccattccattcattttttacaaaaccaaacaatggaa 197  Q
    ||||||||||| |||||||| |  ||| ||||||||| |||||||||| | | |||||||||||||    
T  8961721 ggatggaatggattccatcatataccactccattccactcattttttaaatatccaaacaatggaa 8961656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 72 - 169
Target Start/End: Original strand, 13191724 - 13191821
Alignment:
Q  72 cattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttccatcacactccattccattccat 169  Q
    ||||||||| |||||  ||||||||||||||||||  ||||||    | || ||||||| | ||||||| ||||||||  || |||||||||||||||    
T  13191724 cattccattggatacctcccaaattggggggaatgagaaattgaaggattgagtggtatagaatggaattggttccattgcattccattccattccat 13191821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 30699591 - 30699526
Alignment:
Q  132 ggatggaatgggttccatcacactccattccattccattcattttttacaaaaccaaacaatggaa 197  Q
    ||||||||||| |||||||| |  ||| ||||||||| |||||||||| | | |||||||||||||    
T  30699591 ggatggaatggattccatcatataccactccattccactcattttttaaatatccaaacaatggaa 30699526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 6390563 - 6390603
Alignment:
Q  72 cattccatttgatacaccccaaattggggggaatggaaaat 112  Q
    ||||||||| ||||||||| |||||||| ||||||||||||    
T  6390563 cattccattagatacacccgaaattgggtggaatggaaaat 6390603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 3e-47; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 58 - 197
Target Start/End: Original strand, 23417196 - 23417335
Alignment:
Q  58 ttattaatgtgttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttccatcacactcc 157  Q
    ||||||||||||||||||||||| |||||||||||||||||  |||||| ||||||||   |||| |||||||||||||||||||||||||||| |||||    
T  23417196 ttattaatgtgttccattccattggatacaccccaaattggatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcatactcc 23417295  T
Q  158 attccattccattcattttttacaaaaccaaacaatggaa 197  Q
    || ||||||||||| |||||||||||||||||||||||||    
T  23417296 atgccattccattccttttttacaaaaccaaacaatggaa 23417335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 47 - 200
Target Start/End: Original strand, 261718 - 261870
Alignment:
Q  47 ttgtaattgtcttattaatgtgttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttc 146  Q
    |||||||||| |||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||  |||||| || ||||| |||||||||| |||    
T  261718 ttgtaattgtgttattaatgtgttccatttcattggatacaccccaaattgaggggaatggaaaattgagtaaatgagttgtatttgatggaatggattc 261817  T
Q  147 catcacactccattccattccattcattttttacaaaaccaaacaatggaatat 200  Q
    |||||||  ||||||||||||| || |||||||||||| |||||||||||||||    
T  261818 catcacatcccattccattcca-tctttttttacaaaatcaaacaatggaatat 261870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 47 - 198
Target Start/End: Complemental strand, 12633587 - 12633428
Alignment:
Q  47 ttgtaattgtcttattaatgtgttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattgg---atggaatggg 143  Q
    |||||||||| |||||||||| || ||||||||| ||||||||| || ||||| ||||||||||||||| |||||| ||||||||||   |||||||| |    
T  12633587 ttgtaattgtattattaatgtatttcattccattggatacaccctaatttgggaggaatggaaaattggctaaatgagtggtattggtcgatggaatgag 12633488  T
Q  144 ttccatcacactccattccattccattc----attt-tttacaaaaccaaacaatggaat 198  Q
    ||||||||||||||| ||||||||||||    |||| |||||||||||||||||||||||    
T  12633487 ttccatcacactccactccattccattccattatttgtttacaaaaccaaacaatggaat 12633428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 58 - 194
Target Start/End: Complemental strand, 19625566 - 19625430
Alignment:
Q  58 ttattaatgtgttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttccatcacactcc 157  Q
    ||||||||||||||||| ||||| |||||||| ||| ||||| ||||||||||||||| | |||| |||||||||||||||||  ||||||||||| |||    
T  19625566 ttattaatgtgttccatcccattggatacaccacaatttgggaggaatggaaaattggatgaatgagtggtattggatggaattagttccatcacattcc 19625467  T
Q  158 attccattccattcattttttacaaaaccaaacaatg 194  Q
    |||||||||||||   ||||| |||||||||||||||    
T  19625466 attccattccattacatttttgcaaaaccaaacaatg 19625430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 73 - 197
Target Start/End: Original strand, 36657597 - 36657722
Alignment:
Q  73 attccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttccatcacactccattccattcca-ttc 171  Q
    |||||||| |||||||||||||||||| ||| || |||  ||||||||||  ||||||||||||||||||||||||||||||| | || ||||||| ||     
T  36657597 attccattggatacaccccaaattgggtggattgaaaatctggttaaatgaatggtattggatggaatgggttccatcacacttcttttcattccatttt 36657696  T
Q  172 attttttacaaaaccaaacaatggaa 197  Q
     |||||||||||||||||||||||||    
T  36657697 tttttttacaaaaccaaacaatggaa 36657722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 72 - 197
Target Start/End: Complemental strand, 29429044 - 29428919
Alignment:
Q  72 cattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttccatcacactccattccattccattc 171  Q
    |||||||||  |||||||||||||||| |||||||  |||||||   |  | ||| ||| ||||||||||| ||||||||   | |||||||||||||||    
T  29429044 cattccattgcatacaccccaaattggagggaatgataaattggaagagagagtgctatgggatggaatggattccatcatgtttcattccattccattc 29428945  T
Q  172 attttttacaaaaccaaacaatggaa 197  Q
    |||||||||||| |||||||||||||    
T  29428944 attttttacaaatccaaacaatggaa 29428919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 141
Target Start/End: Complemental strand, 35759893 - 35759799
Alignment:
Q  47 ttgtaattgtcttattaatgtgttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatg 141  Q
    |||||||||  |||||||||||||||||||||||  ||||||||||  ||||| || ||  |||||||  | |||| ||||||||||||||||||    
T  35759893 ttgtaattgaattattaatgtgttccattccattgcatacaccccagtttgggagggattaaaaattgaatgaatgagtggtattggatggaatg 35759799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 197
Target Start/End: Original strand, 5925181 - 5925250
Alignment:
Q  128 tattggatggaatgggttccatcacactccattccattccattcattttttacaaaaccaaacaatggaa 197  Q
    ||||||||||||||| |||||||| | || ||||||| ||||  | ||||||||||||||||||||||||    
T  5925181 tattggatggaatggattccatcatattctattccataccatatactttttacaaaaccaaacaatggaa 5925250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 49 - 198
Target Start/End: Complemental strand, 28219177 - 28219027
Alignment:
Q  49 gtaattgtcttattaatgtg-ttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttcc 147  Q
    |||||| | ||||||||||| |||||||||||| |||||||||||||||||| |||||| |||||||    |||| ||||||||||||||||||||||||    
T  28219177 gtaattatattattaatgtggttccattccattggatacaccccaaattgggtggaatgaaaaattgaaggaatgagtggtattggatggaatgggttcc 28219078  T
Q  148 atcacactccattccattccattcattttttacaaaaccaaacaatggaat 198  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  28219077 atcacactccattccattccatcccttttttacaaaaccaaacaatggaat 28219027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 93 - 198
Target Start/End: Original strand, 7444692 - 7444797
Alignment:
Q  93 aattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttccatcacactccattccattccattcattttttacaaaaccaaacaa 192  Q
    |||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  7444692 aatttgggggaatagaaaattggttaaatgagtggtattggatggaatgggttccatcacactccattccattccattcattttttagaaaaccaaacaa 7444791  T
Q  193 tggaat 198  Q
    ||||||    
T  7444792 tggaat 7444797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 46 - 201
Target Start/End: Complemental strand, 10354416 - 10354261
Alignment:
Q  46 gttgtaattgtcttattaatgtgttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggtt 145  Q
    ||||| ||||| ||||| |||| |||||||||||| ||||||||  || |||||||||||| ||| |||| | ||||||||||||||||||||||| |||    
T  10354416 gttgtcattgtattatttatgtattccattccattggatacaccttaatttggggggaatgaaaatttggcttaatgggtggtattggatggaatgagtt 10354317  T
Q  146 ccatcacactccattccattccattcattttttacaaaaccaaacaatggaatatg 201  Q
     |||| |||||||||||||||||||| |||||| ||||| |||||||| |||||||    
T  10354316 tcatcgcactccattccattccattccttttttgcaaaatcaaacaatagaatatg 10354261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 48 - 198
Target Start/End: Original strand, 28199184 - 28199334
Alignment:
Q  48 tgtaattgtcttattaatgtgttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttcc 147  Q
    ||||||||  ||||||||||||||||| ||||| |||||||||||| ||||| ||||||||||||||  | |||| |||||||||||||||||  |||||    
T  28199184 tgtaattgggttattaatgtgttccatcccattggatacaccccaatttgggaggaatggaaaattgaatgaatgagtggtattggatggaataagttcc 28199283  T
Q  148 atcacactccattccattccattcattttttacaaaaccaaacaatggaat 198  Q
    |||||| ||||||| ||||||||    |||| |||||||||||||||||||    
T  28199284 atcacattccattcgattccattacaattttccaaaaccaaacaatggaat 28199334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 59 - 196
Target Start/End: Complemental strand, 44246479 - 44246347
Alignment:
Q  59 tattaatgtgttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttccatcacactcca 158  Q
    |||||||||||||||||||||| |||||||||||||||||  |||||| |||||||    |||| |||||||||||||||||| ||||||||||||||||    
T  44246479 tattaatgtgttccattccattggatacaccccaaattggatggaatgaaaaattgaaagaatgagtggtattggatggaatgagttccatcacactcca 44246380  T
Q  159 ttccattccattcattttttacaaaaccaaacaatgga 196  Q
    |||||||||     |||| |||||||||||||||||||    
T  44246379 ttccattcc-----ttttatacaaaaccaaacaatgga 44246347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 47 - 198
Target Start/End: Original strand, 1499191 - 1499343
Alignment:
Q  47 ttgtaattgtcttattaatgtgttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttc 146  Q
    |||||||||| |||| ||||  |||||||||||| |||||||| ||||||||||| |||  |||||||||| ||||  |||||||||||||||||  |||    
T  1499191 ttgtaattgtattataaatgcattccattccattggatacacctcaaattgggggaaataaaaaattggttgaatgattggtattggatggaatgaattc 1499290  T
Q  147 catcacactccattccattccattcattttt-tacaaaaccaaacaatggaat 198  Q
    ||||||||| ||||||||||||||  ||||| ||||||| |||||||| ||||    
T  1499291 catcacactgcattccattccatttttttttatacaaaagcaaacaatagaat 1499343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 47 - 171
Target Start/End: Original strand, 17999917 - 18000040
Alignment:
Q  47 ttgtaattgtcttattaatgtgttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttc 146  Q
    |||| ||||| |||||||||| |||||||||||  ||||||||||||||||| |||| || ||| |||| | |||| |||||||||||| |||||| |||    
T  17999917 ttgtcattgttttattaatgtattccattccatcggatacaccccaaattggaggga-tgaaaatttggcttaatgagtggtattggatagaatggattc 18000015  T
Q  147 catcacactccattccattccattc 171  Q
    |||||||||||||||||||| ||||    
T  18000016 catcacactccattccattcaattc 18000040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 6476878 - 6476830
Alignment:
Q  150 cacactccattccattccattcattttttacaaaaccaaacaatggaat 198  Q
    |||||||||||||||||| ||||| |||||||||  |||||||||||||    
T  6476878 cacactccattccattccgttcatcttttacaaattcaaacaatggaat 6476830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 88
Target Start/End: Complemental strand, 6479354 - 6479307
Alignment:
Q  41 acaatgttgtaattgtcttattaatgtgttccattccatttgatacac 88  Q
    |||||||||||||||| |||||| | |||||||||||||| |||||||    
T  6479354 acaatgttgtaattgtattattagtatgttccattccattggatacac 6479307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 72 - 169
Target Start/End: Original strand, 20717593 - 20717690
Alignment:
Q  72 cattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttccatcacactccattccattccat 169  Q
    ||||||||| |||||  ||||||||||||||||||  ||||||    | || ||||||| | ||||||| ||||||||  || |||||||||||||||    
T  20717593 cattccattggatacctcccaaattggggggaatgagaaattgaaggattgagtggtatagaatggaattggttccattgcattccattccattccat 20717690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 38022979 - 38023044
Alignment:
Q  132 ggatggaatgggttccatcacactccattccattccattcattttttacaaaaccaaacaatggaa 197  Q
    ||||||||||| |||||||| |  ||| ||||||||| |||||||||| | | |||||||||||||    
T  38022979 ggatggaatggattccatcatataccactccattccactcattttttaaatatccaaacaatggaa 38023044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 7e-42; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 46 - 195
Target Start/End: Original strand, 34924709 - 34924859
Alignment:
Q  46 gttgtaattgtcttattaatgtgttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtatt-ggatggaatgggt 144  Q
    ||||||||| | ||||||  ||||||||||||||| |||||  ||||| |||||||||||| |||| ||  |||||| |||||||| |||||||||||||    
T  34924709 gttgtaattttattattagagtgttccattccattagatacctcccaatttggggggaatgaaaaaatgactaaatgagtggtatttggatggaatgggt 34924808  T
Q  145 tccatcacactccattccattccattcattttttacaaaaccaaacaatgg 195  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  34924809 tccatcacactccattccattccattcattttttacataaccaaacaatgg 34924859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 46 - 197
Target Start/End: Complemental strand, 38679901 - 38679751
Alignment:
Q  46 gttgtaattgtcttattaatgtgttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggtt 145  Q
    ||||| |||||  ||||||||| |||||||| ||| ||||||||||||||| |||| |||| ||| |||| | |||| || |||||| |||||||| |||    
T  38679901 gttgtcattgtactattaatgtattccattcaattggatacaccccaaatttgggg-aatgaaaatttggcttaatgagtagtattgaatggaatgagtt 38679803  T
Q  146 ccatcacactccattccattccattcattttttacaaaaccaaacaatggaa 197  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  38679802 ccatcacactccattccattctattcattttttacaaaaccaaacaatggaa 38679751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 46 - 201
Target Start/End: Original strand, 42025314 - 42025473
Alignment:
Q  46 gttgtaattgtcttattaatgtgttccattccatttgatacaccccaaattggggggaatggaaaattggtt----aaatgggtggtattggatggaatg 141  Q
    ||||||||| | |||||||  ||||| |||||||  |||||   |||| |||||||||||  ||||| ||||    ||||| ||||||||||||||||||    
T  42025314 gttgtaattttattattaaaatgttcaattccatcggataccttccaatttggggggaataaaaaatgggttggctaaatgagtggtattggatggaatg 42025413  T
Q  142 ggttccatcacactccattccattccattcattttttacaaaaccaaacaatggaatatg 201  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  42025414 ggttccatcacactccattcaattccattcattttttacaaaaccaaacaatggaatatg 42025473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 46 - 195
Target Start/End: Original strand, 14112305 - 14112456
Alignment:
Q  46 gttgtaattgtcttattaatgtgttccattccatttgatacaccccaaatt-ggggggaatggaaaattggttaaatgggtggtattggatggaatgggt 144  Q
    ||||||||| | ||||||  ||||||||||||||| |||||  ||| | || |||||||||| |||| ||  |||||| ||||||||||||||||| |||    
T  14112305 gttgtaattttattattagagtgttccattccattggatacctccccatttaggggggaatgaaaaaatgactaaatgagtggtattggatggaatcggt 14112404  T
Q  145 tccatcacactccattccattccattcattttttac-aaaaccaaacaatgg 195  Q
    |||||||||||| ||||||||||||||||||||||| | |||||||||||||    
T  14112405 tccatcacactctattccattccattcattttttactataaccaaacaatgg 14112456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 47 - 193
Target Start/End: Original strand, 28873679 - 28873829
Alignment:
Q  47 ttgtaattgtcttattaatgtgttccattccatttgatacaccccaaattggggggaatggaaaatt-ggttaaatg---ggtggtattggatggaatgg 142  Q
    |||||||||  |||||||||||||||||||||||  |||||||  ||||||| ||||||  |||||| || | || |   |||||||||||||||||| |    
T  28873679 ttgtaattggattattaatgtgttccattccattaaatacaccttaaattggagggaataaaaaatttggatgaaagagtggtggtattggatggaatag 28873778  T
Q  143 gttccatcacactccattccattccattcattttttacaaaaccaaacaat 193  Q
    |||||||||||| |||||||||| ||||| |||||||||||||||||||||    
T  28873779 gttccatcacacaccattccatttcattccttttttacaaaaccaaacaat 28873829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 32 - 198
Target Start/End: Complemental strand, 30800357 - 30800191
Alignment:
Q  32 aaagtaggaacaatgttgtaattgtcttattaatgtgttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtatt 131  Q
    |||||||| | |||||| ||||| | |||||||||||||| |||| |||  ||||||||| |||| ||  ||||||||||    |||||||  |||||||    
T  30800357 aaagtagggagaatgttctaattatattattaatgtgttctattctattgaatacaccccgaattaggaagaatggaaaaaaatttaaatgaatggtatt 30800258  T
Q  132 ggatggaatgggttccatcacactccattccattccattcattttttacaaaaccaaacaatggaat 198  Q
    |||||||||| |||||||||||||| ||| ||||||| || ||||||||||||| ||||||| ||||    
T  30800257 ggatggaatgagttccatcacactctatttcattccactccttttttacaaaactaaacaatagaat 30800191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 11354902 - 11354775
Alignment:
Q  73 attccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttccatcacactccattccattccattca 172  Q
    |||||||| |||||||||||| |||| ||||||  |||||||      ||||||||||||||||||||  |||||||   | ||||| ||| ||||||||    
T  11354902 attccattggatacaccccaatttggagggaataaaaaattgaaggtttgggtggtattggatggaatcagttccattgtattccatcccactccattca 11354803  T
Q  173 ttttttacaaaaccaaacaatggaatat 200  Q
     ||||| |||| ||||||||||||||||    
T  11354802 ctttttgcaaatccaaacaatggaatat 11354775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 123 - 201
Target Start/End: Complemental strand, 29844322 - 29844244
Alignment:
Q  123 ggtggtattggatggaatgggttccatcacactccattccattccattcattttttacaaaaccaaacaatggaatatg 201  Q
    |||||||| ||||||||||| |||||||| | |||||| || |||||| |  ||||||||| |||||||||||||||||    
T  29844322 ggtggtataggatggaatggattccatcatattccatttcactccattaaaattttacaaatccaaacaatggaatatg 29844244  T

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Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 24945123 - 24944997
Alignment:
Q  73 attccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttccatcacactccattccattccattca 172  Q
    |||||||| ||||||||  ||||||||||||||| |||||||      | ||||||||||||||||||| |||||||   | ||||||||| || | |||    
T  24945123 attccattcgatacaccttaaattggggggaatg-aaaattgaaggttttggtggtattggatggaatgagttccattgtattccattccactcgagtca 24945025  T
Q  173 ttttttacaaaaccaaacaatggaatat 200  Q
     ||||| |||| ||||||||||||||||    
T  24945024 ctttttgcaaatccaaacaatggaatat 24944997  T

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Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 197
Target Start/End: Complemental strand, 20989791 - 20989717
Alignment:
Q  123 ggtggtattggatggaatgggttccatcacactccattccattccattcattttttacaaaaccaaacaatggaa 197  Q
    ||||| || ||||||||||| |||||||    ||||||||||||||||||||||||| ||| | |||||||||||    
T  20989791 ggtggcataggatggaatggattccatcttgttccattccattccattcattttttataaacctaaacaatggaa 20989717  T

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Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 177
Target Start/End: Original strand, 5358200 - 5358329
Alignment:
Q  48 tgtaattgtcttattaatgtgttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttcc 147  Q
    ||||||| | |||||| ||| ||||||||||||  ||||||| ||||||   | ||||| |||| | | || ||| ||||||||||||| |||  |||||    
T  5358200 tgtaattatattattattgtattccattccattgcatacacctcaaattatagagaatgaaaaaatagatatatgagtggtattggatgaaatttgttcc 5358299  T
Q  148 atcacactccattccattccattcattttt 177  Q
    |||||| | ||||| |||||| ||||||||    
T  5358300 atcacatttcattctattccactcattttt 5358329  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 72 - 169
Target Start/End: Original strand, 22531293 - 22531390
Alignment:
Q  72 cattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttccatcacactccattccattccat 169  Q
    ||||||||| |||||  ||||||||||||||||||  ||||||    | || ||||||| | ||||||| ||||||||  || |||||||||||||||    
T  22531293 cattccattggatacctcccaaattggggggaatgagaaattgaaggattgagtggtatagaatggaattggttccattgcattccattccattccat 22531390  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 72 - 169
Target Start/End: Original strand, 22535978 - 22536075
Alignment:
Q  72 cattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttccatcacactccattccattccat 169  Q
    ||||||||| |||||  ||||||||||||||||||  ||||||    | || ||||||| | ||||||| ||||||||  || |||||||||||||||    
T  22535978 cattccattggatacctcccaaattggggggaatgagaaattgaaggattgagtggtatagaatggaattggttccattgcattccattccattccat 22536075  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 72 - 169
Target Start/End: Original strand, 25993899 - 25993996
Alignment:
Q  72 cattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttccatcacactccattccattccat 169  Q
    ||||||||| |||||  ||||||||||||||||||  ||||||    | || ||||||| | ||||||| ||||||||  || |||||||||||||||    
T  25993899 cattccattggatacctcccaaattggggggaatgagaaattgaaggattgagtggtatagaatggaattggttccattgcattccattccattccat 25993996  T

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Target: scaffold0039 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 46 - 195
Target Start/End: Complemental strand, 57077 - 56928
Alignment:
Q  46 gttgtaattgtcttattaatgtgttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggtt 145  Q
    ||||||||| | ||||||  ||||||||||||||| |||||  ||||| |||||||||||| |||| ||  |||||| ||||||||||||||||| ||||    
T  57077 gttgtaattttattattagagtgttccattccattggatacctcccaatttggggggaatgaaaaaatgactaaatgagtggtattggatggaattggtt 56978  T
Q  146 ccatcacactccattccattccattcattttttacaaaaccaaacaatgg 195  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  56977 ccatcacactctattccattccattcattttttacataaccaaacaatgg 56928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 58 - 197
Target Start/End: Original strand, 38553 - 38687
Alignment:
Q  58 ttattaatgtgttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttccatcacactcc 157  Q
    ||||||||||||||||||||||| |||||| |||||||||   |||||| ||||||||   |||| ||||||||||||||||||||||||||||||||||    
T  38553 ttattaatgtgttccattccattggatacatcccaaattgaatggaatgaaaaattggaagaatgagtggtattggatggaatgggttccatcacactcc 38652  T
Q  158 attccattccattcattttttacaaaaccaaacaatggaa 197  Q
    ||||||||||     |||||||||||||||||||||||||    
T  38653 attccattcc-----ttttttacaaaaccaaacaatggaa 38687  T

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Target: scaffold0224 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 49 - 198
Target Start/End: Original strand, 12394 - 12546
Alignment:
Q  49 gtaattgtcttattaatgtgttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttcca 148  Q
    |||||| | ||||| ||||||||||||| ||| |||||||| ||||||||  ||||||||||||||    |||| |||||||||||||||||||||||||    
T  12394 gtaattatattattgatgtgttccattctattggatacacctcaaattggatggaatggaaaattgaaggaatgagtggtattggatggaatgggttcca 12493  T
Q  149 tcacactccattccattcc---attcattttttacaaaaccaaacaatggaat 198  Q
    |||||||||||||||||||   |||  ||||||||||||||||||||||||||    
T  12494 tcacactccattccattccattattttttttttacaaaaccaaacaatggaat 12546  T

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Target: scaffold0227 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 119 - 198
Target Start/End: Original strand, 232 - 311
Alignment:
Q  119 aatgggtggtattggatggaatgggttccatcacactccattccattccattcattttttacaaaaccaaacaatggaat 198  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||    
T  232 aatgagtggtattggatggaatgggttccatcacactccattccattccatcccatttttacaaaaccaaacaatggaat 311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 198
Target Start/End: Original strand, 19694550 - 19694680
Alignment:
Q  68 gttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttccatcacactccattccattcc 167  Q
    |||||||||||||  || ||||||||||||||||||||| ||||| |    | | | ||| |||||||||||||| |||||| |   |||||||| ||||    
T  19694550 gttccattccattgcatgcaccccaaattggggggaatgaaaaatggaaggatttgatggaattggatggaatggattccattatgttccattcccttcc 19694649  T
Q  168 attcattttttacaaaaccaaacaatggaat 198  Q
    ||| ||||||| |||| ||||||||||||||    
T  19694650 attaattttttgcaaatccaaacaatggaat 19694680  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 200
Target Start/End: Original strand, 7365097 - 7365176
Alignment:
Q  121 tgggtggtattggatggaatgggttccatcacactccattccattccattcattttttacaaaaccaaacaatggaatat 200  Q
    ||||||||||||||||||||| | |||||   | ||||| ||| |||||||| ||||| |||| ||||||||||||||||    
T  7365097 tgggtggtattggatggaatgagatccattgtattccatcccactccattcactttttgcaaatccaaacaatggaatat 7365176  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 67 - 149
Target Start/End: Complemental strand, 10871364 - 10871282
Alignment:
Q  67 tgttccattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttccat 149  Q
    ||||||||||||||  ||||| ||||||||| |||||||| ||| ||||   | || ||||||||||||| ||||||||||||    
T  10871364 tgttccattccattgcatacatcccaaattgaggggaatgaaaatttggaagagtgagtggtattggatgaaatgggttccat 10871282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 200
Target Start/End: Complemental strand, 29063652 - 29063577
Alignment:
Q  125 tggtattggatggaatgggttccatcacactccattccattccattcattttttacaaaaccaaacaatggaatat 200  Q
    ||||||||||||||||| | |||||   | ||||| ||| |||||||| ||||| |||| ||||||||||||||||    
T  29063652 tggtattggatggaatgagatccattgtattccatcccactccattcactttttgcaaatccaaacaatggaatat 29063577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 200
Target Start/End: Complemental strand, 29118506 - 29118431
Alignment:
Q  125 tggtattggatggaatgggttccatcacactccattccattccattcattttttacaaaaccaaacaatggaatat 200  Q
    ||||||||||||||||| | |||||   | ||||| ||| |||||||| ||||| |||| ||||||||||||||||    
T  29118506 tggtattggatggaatgagatccattgtattccatcccactccattcactttttgcaaatccaaacaatggaatat 29118431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 168
Target Start/End: Complemental strand, 33091271 - 33091175
Alignment:
Q  72 cattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttccatcacactccattccattcca 168  Q
    ||||||||| |||||  ||||||||||||||||||  ||||||    | || ||||||| | ||||||| ||||||||  || ||||||||||||||    
T  33091271 cattccattggatacctcccaaattggggggaatgagaaattgaaggattgagtggtatagaatggaattggttccattgcattccattccattcca 33091175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 201
Target Start/End: Original strand, 9265 - 9343
Alignment:
Q  123 ggtggtattggatggaatgggttccatcacactccattccattccattcattttttacaaaaccaaacaatggaatatg 201  Q
    ||||| || ||||||||||| |||||||| | || |||||| |||||| |  |||||||||  ||||||||||||||||    
T  9265 ggtggcataggatggaatggattccatcatattcaattccactccattaaaattttacaaattcaaacaatggaatatg 9343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 72 - 169
Target Start/End: Original strand, 21430 - 21527
Alignment:
Q  72 cattccatttgatacaccccaaattggggggaatggaaaattggttaaatgggtggtattggatggaatgggttccatcacactccattccattccat 169  Q
    ||||||||| |||||  ||||||||||||||||||  ||||||    | || ||||||| | ||||||| ||||||||  || |||||||||||||||    
T  21430 cattccattggatacctcccaaattggggggaatgagaaattgaaggattgagtggtatagaatggaattggttccattgcattccattccattccat 21527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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