View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21315_low_3 (Length: 503)
Name: NF21315_low_3
Description: NF21315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21315_low_3 |
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| [»] scaffold0017 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 182 - 486
Target Start/End: Original strand, 746238 - 746542
Alignment:
| Q |
182 |
aatatttgtgataaaaatcccttagggttttggccaattcgattgggacaaagctctcaacattctcttatggtttcaagtgcacaaagctcctactatt |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
746238 |
aatatttgtgataaaaatcccttagggttttggccaattcgattgggacaaagctctcaacattctcttatggtttccagtgcacaaagctcctactatt |
746337 |
T |
|
| Q |
282 |
gccctagcaagcatattgatgctaatgttacctatgattcaaaaatcggtatgaagaagaaggatgaagttaaaaatgataaaaacttgccatcatacta |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
746338 |
accctagcaagcatattgatgctaatgttacctatgattcaaaaatcagtatgaagaagaaggatgaagttaaaaatgacaaaaacttgccatcatacta |
746437 |
T |
|
| Q |
382 |
ttacaatggaaatgcaatgataatgcaatcatatcctattgctatgcctactcctccttttcagaatattgcaaacctatctcatgaatatctactttat |
481 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
746438 |
ttacaatggaaatgcaatgataatgcaatcatatcctattgctatgcctactcctccttttcagaatcttgcaaacctatcccatgaatatctactttat |
746537 |
T |
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| Q |
482 |
ggatc |
486 |
Q |
| |
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||||| |
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| T |
746538 |
ggatc |
746542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 746116 - 745930
Alignment:
| Q |
1 |
tttcgcatattcatcttttgatcacatgcgtcaagcttagaatccaaaaacctaacaaatgacctcaattgttcatatccaaaagaattgtaagattcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
746116 |
tttcgcatattcatcttttgatcacatgcgtcaagcttagaatccaaaaacctaacaaatgacctcaattgttcatttccaaaagaattgtaagattcat |
746017 |
T |
|
| Q |
101 |
cccaagttggatacttcatctttaacctctctttacgcactttgtaaatctccgattcaacttttttcatcctctccttaaaatatt |
187 |
Q |
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| T |
746016 |
cccaagttggatacttcatctttaacctctctttacgcactttgtaaatctccaattcaacttttttcatcctttccttaaaatatt |
745930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 5 - 187
Target Start/End: Complemental strand, 752015 - 751833
Alignment:
| Q |
5 |
gcatattcatcttttgatcacatgcgtcaagcttagaatccaaaaacctaacaaatgacctcaattgttcatatccaaaagaattgtaagattcatccca |
104 |
Q |
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|||||||||||||| ||| ||||| ||||||||| ||||||| | ||| ||||| |||| |||||||||| | ||| | ||||| | ||||||||||| |
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| T |
752015 |
gcatattcatctttagattgcatgcatcaagcttaaaatccaagatgctagcaaataaccttaattgttcatcttcaagaaaattgaatgattcatccca |
751916 |
T |
|
| Q |
105 |
agttggatacttcatctttaacctctctttacgcactttgtaaatctccgattcaacttttttcatcctctccttaaaatatt |
187 |
Q |
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|||| ||||||||||||| ||| ||||||| ||||||||| ||||||| ||||||||||||||||||| || |||||||||| |
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| T |
751915 |
agtttgatacttcatcttaaacttctctttgcgcactttggaaatctcaaattcaacttttttcatcctttctttaaaatatt |
751833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 337 - 475
Target Start/End: Original strand, 752392 - 752530
Alignment:
| Q |
337 |
gaagaaggatgaagttaaaaatgataaaaacttgccatcatactattacaatggaaatgcaatgataatgcaatcatatcctattgctatgcctactcct |
436 |
Q |
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|||||||||||||| | |||||||||||| ||||| |||| ||||||||| |||||| ||||||||||||||||||||||||||||||| |||||| | |
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| T |
752392 |
gaagaaggatgaagctgaaaatgataaaattctgccaccatattattacaatagaaatggaatgataatgcaatcatatcctattgctatgtctactctt |
752491 |
T |
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| Q |
437 |
ccttttcagaatattgcaaacctatctcatgaatatcta |
475 |
Q |
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|||| ||| ||| || |||||||||| |||||| ||||| |
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| T |
752492 |
ccttctcaaaatctttcaaacctatcccatgaacatcta |
752530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 5 - 185
Target Start/End: Original strand, 7327418 - 7327598
Alignment:
| Q |
5 |
gcatattcatcttttgatcacatgcgtcaagcttagaatccaaaaacctaacaaatgacctcaattgttcatatccaaaagaattgtaagattcatccca |
104 |
Q |
| |
|
|||||| |||| |||||| ||| || |||||||| |||||||| | ||| |||||||||||| |||||| ||||| |||||||||||||||||||| |
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| T |
7327418 |
gcatatgcatcctttgattacaagcatcaagcttggaatccaacatgctagcaaatgacctcacttgttccactccaagtgaattgtaagattcatccca |
7327517 |
T |
|
| Q |
105 |
agttggatacttcatctttaacctctctttacgcactttgtaaatctccgattcaacttttttcatcctctccttaaaata |
185 |
Q |
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| T |
7327518 |
ggatggatacatcatctttatcttctctttgcgcactttggaaatctcaaatttaatttttttcatcctttccttaaaata |
7327598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 323 - 485
Target Start/End: Complemental strand, 7327058 - 7326896
Alignment:
| Q |
323 |
aaaatcggtatgaagaagaaggatgaagttaaaaatgataaaaacttgccatcatactattacaatggaaatgcaatgataatgcaatcatatcctattg |
422 |
Q |
| |
|
||||||| |||||| | |||||||| || | |||||||| ||||||| || ||||||||||||||||||||||| || ||||||||||||||| ||| |
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| T |
7327058 |
aaaatcgatatgaaaaggaaggatgtagctgaaaatgatgaaaacttatcaccatactattacaatggaaatgcatcgacgatgcaatcatatccttttg |
7326959 |
T |
|
| Q |
423 |
ctatgcctactcctccttttcagaatattgcaaacctatctcatgaatatctactttatggat |
485 |
Q |
| |
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|||||| | ||| |||||| |||||| || || ||||| | |||| || || |||| |||||| |
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| T |
7326958 |
ctatgcattctcttcctttccagaatctttcatacctaccacatggatttcaacttaatggat |
7326896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 190 - 273
Target Start/End: Original strand, 752176 - 752259
Alignment:
| Q |
190 |
tgataaaaatcccttagggttttggccaattcgattgggacaaagctctcaacattctcttatggtttcaagtgcacaaagctc |
273 |
Q |
| |
|
||||||||| || ||||||||||||||| || || |||||||||||||||| |||| ||||||||||| |||||||||||| |
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| T |
752176 |
tgataaaaaccctttagggttttggccacttatatcaggacaaagctctcaaccctctcatatggtttcaactgcacaaagctc |
752259 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 229 - 277
Target Start/End: Original strand, 752251 - 752299
Alignment:
| Q |
229 |
acaaagctctcaacattctcttatggtttcaagtgcacaaagctcctac |
277 |
Q |
| |
|
|||||||||||||| ||||| ||||||||| ||||||||||||| |||| |
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| T |
752251 |
acaaagctctcaaccttctcctatggtttctagtgcacaaagcttctac |
752299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 65 - 185
Target Start/End: Original strand, 51792568 - 51792688
Alignment:
| Q |
65 |
tcaattgttcatatccaaaagaattgtaagattcatcccaagttggatacttcatctttaacctctctttacgcactttgtaaatctccgattcaacttt |
164 |
Q |
| |
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|||||||||| ||||| ||||||| ||||||||| ||||||||||||| ||||||||||| ||||||||||||||||| |||||| |||||| ||| |
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| T |
51792568 |
tcaattgttccgctccaagagaattgaaagattcattccaagttggatacatcatctttaacttctctttacgcactttggtaatctcgaattcaagttt |
51792667 |
T |
|
| Q |
165 |
tttcatcctctccttaaaata |
185 |
Q |
| |
|
| | || || ||||||||||| |
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| T |
51792668 |
tctaattctttccttaaaata |
51792688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 381 - 485
Target Start/End: Complemental strand, 51792081 - 51791977
Alignment:
| Q |
381 |
attacaatggaaatgcaatgataatgcaatcatatcctattgctatgcctactcctccttttcagaatattgcaaacctatctcatgaatatctacttta |
480 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||| |||||| |||| ||||||||||||| | |||||||| | |||| || || |||| | |
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| T |
51792081 |
attacaatggaaatgcaatgacaatgcaatcatatcctattactatgcacactcttccttttcagaatctctcaaacctaccacatggatttcaacttaa |
51791982 |
T |
|
| Q |
481 |
tggat |
485 |
Q |
| |
|
||||| |
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|
| T |
51791981 |
tggat |
51791977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 51792355 - 51792290
Alignment:
| Q |
182 |
aatatttgtgataaaaatcccttagggttttggccaattcgattgggacaaagctctcaacattct |
247 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||| ||| || ||||||||||||||||| |||| |
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| T |
51792355 |
aatattagtgataaaaaccccttagggttttggccacttcaatcgggacaaagctctcaaccttct |
51792290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 433
Target Start/End: Complemental strand, 38292 - 38237
Alignment:
| Q |
378 |
actattacaatggaaatgcaatgataatgcaatcatatcctattgctatgcctact |
433 |
Q |
| |
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||||||| ||||||||||||||| |||||||||||||||||| || |||| |||| |
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| T |
38292 |
actattataatggaaatgcaatgccaatgcaatcatatcctatcgcaatgcatact |
38237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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