View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21315_low_4 (Length: 472)
Name: NF21315_low_4
Description: NF21315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21315_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 293 - 460
Target Start/End: Original strand, 2914322 - 2914493
Alignment:
| Q |
293 |
atataaaatccg-aatattagaatttagaaacaatcaagcgcgannnnnnnaaaacaacaaaattaagatgaaatcaaaccgtccaatcacacttggtaa |
391 |
Q |
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| T |
2914322 |
atataaaatccccaatattagaatttagaaacaatcaagcgcgatttttttaaaacaacaaaattaagatgaaatcaaaccgtccaatcacacttggtaa |
2914421 |
T |
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| Q |
392 |
atttacaagttata--attttcttccaaaa-atctcaatcccaaataacgctcaactaaacaacttcatctc |
460 |
Q |
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| T |
2914422 |
atttacaagttataatattttcttccaaaagatctcaatcccaaataacactcacctaaacaacttcatctc |
2914493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 2913860 - 2913962
Alignment:
| Q |
21 |
ttaaaagaaaaagaaagtatatttgactata-ttgactttgtaatttttgagggtgattctcttttgactatccaattattaagtatatttgactatctt |
119 |
Q |
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| T |
2913860 |
ttaaaagaaaaagaaagtatatttgactataattgactttgtaatttttgagggtgattctcttttgactatctaattattaagtatatttgactatcct |
2913959 |
T |
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| Q |
120 |
tag |
122 |
Q |
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| T |
2913960 |
tag |
2913962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 218 - 301
Target Start/End: Original strand, 2914054 - 2914137
Alignment:
| Q |
218 |
ctatcagttatcacacatgtactggaacaaaattaccgaaaattcagcaaacttaatcccaaaattgtcgcataaatataaaat |
301 |
Q |
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| T |
2914054 |
ctatcagttatcacacatgtactggaacaaaactaccgaaaattcagcaaacttaatcctaaaattgtcgcataaatataaaat |
2914137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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