View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21315_low_5 (Length: 468)
Name: NF21315_low_5
Description: NF21315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21315_low_5 |
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| [»] scaffold0017 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 419; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Original strand, 746092 - 746542
Alignment:
| Q |
1 |
gtgatcaaaagatgaatatgcgaaaagatgaatcatacaaggtcaataaccttattagttctccttacttgacctcaaattcaggtaccaacttcaatct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
746092 |
gtgatcaaaagatgaatatgcgaaaagatgaatcatacaaggtcaataaccttattagttctccttacttgacctcaaattcaggtaccaacttcaatct |
746191 |
T |
|
| Q |
101 |
catgcataccaacatatctcaagagaaaatttactctccattgatgaatatttgtgataaaaatcccttagggttttggccaattcgattgggacaaagc |
200 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
746192 |
catgcataccaacatatctcaagttaaaatttactctccattgatgaatatttgtgataaaaatcccttagggttttggccaattcgattgggacaaagc |
746291 |
T |
|
| Q |
201 |
tctcaacattctcttatggtttcaagtgcacaaagctcctactattgccctagcaagcatattgatgctaatgttacctatgattcaaaaatcggtatga |
300 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
746292 |
tctcaacattctcttatggtttccagtgcacaaagctcctactattaccctagcaagcatattgatgctaatgttacctatgattcaaaaatcagtatga |
746391 |
T |
|
| Q |
301 |
agaagaaggatgaagttaaaaatgataaaaacttgccatcatactattacaatggaaatgcaatgataatgcaatcatatcctattgctatgcctactcc |
400 |
Q |
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| T |
746392 |
agaagaaggatgaagttaaaaatgacaaaaacttgccatcatactattacaatggaaatgcaatgataatgcaatcatatcctattgctatgcctactcc |
746491 |
T |
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| Q |
401 |
tccttttcagaatattgcaaacctatctcatgaatatctactttatggatc |
451 |
Q |
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| T |
746492 |
tccttttcagaatcttgcaaacctatcccatgaatatctactttatggatc |
746542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 302 - 440
Target Start/End: Original strand, 752392 - 752530
Alignment:
| Q |
302 |
gaagaaggatgaagttaaaaatgataaaaacttgccatcatactattacaatggaaatgcaatgataatgcaatcatatcctattgctatgcctactcct |
401 |
Q |
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|||||||||||||| | |||||||||||| ||||| |||| ||||||||| |||||| ||||||||||||||||||||||||||||||| |||||| | |
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| T |
752392 |
gaagaaggatgaagctgaaaatgataaaattctgccaccatattattacaatagaaatggaatgataatgcaatcatatcctattgctatgtctactctt |
752491 |
T |
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| Q |
402 |
ccttttcagaatattgcaaacctatctcatgaatatcta |
440 |
Q |
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|||| ||| ||| || |||||||||| |||||| ||||| |
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| T |
752492 |
ccttctcaaaatctttcaaacctatcccatgaacatcta |
752530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 46 - 238
Target Start/End: Original strand, 752067 - 752259
Alignment:
| Q |
46 |
ataaccttattagttctccttacttgacctcaaattcaggtaccaacttcaatctcatgcataccaacatatctcaagagaaaatttactctccattgat |
145 |
Q |
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||||||||| |||||||||||||||| ||||||| || ||| | ||||||||||| ||| | |||||| ||||||| | ||||| | |||||||| |
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| T |
752067 |
ataaccttaatagttctccttacttggactcaaatccaagtagctacttcaatctcccgcaaaacaacatgtctcaagcacacatttatccaccattgat |
752166 |
T |
|
| Q |
146 |
gaatatttgtgataaaaatcccttagggttttggccaattcgattgggacaaagctctcaacattctcttatggtttcaagtgcacaaagctc |
238 |
Q |
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|||||| ||||||||| || ||||||||||||||| || || |||||||||||||||| |||| ||||||||||| |||||||||||| |
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| T |
752167 |
gaatatcaatgataaaaaccctttagggttttggccacttatatcaggacaaagctctcaaccctctcatatggtttcaactgcacaaagctc |
752259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 288 - 450
Target Start/End: Complemental strand, 7327058 - 7326896
Alignment:
| Q |
288 |
aaaatcggtatgaagaagaaggatgaagttaaaaatgataaaaacttgccatcatactattacaatggaaatgcaatgataatgcaatcatatcctattg |
387 |
Q |
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||||||| |||||| | |||||||| || | |||||||| ||||||| || ||||||||||||||||||||||| || ||||||||||||||| ||| |
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| T |
7327058 |
aaaatcgatatgaaaaggaaggatgtagctgaaaatgatgaaaacttatcaccatactattacaatggaaatgcatcgacgatgcaatcatatccttttg |
7326959 |
T |
|
| Q |
388 |
ctatgcctactcctccttttcagaatattgcaaacctatctcatgaatatctactttatggat |
450 |
Q |
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|||||| | ||| |||||| |||||| || || ||||| | |||| || || |||| |||||| |
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| T |
7326958 |
ctatgcattctcttcctttccagaatctttcatacctaccacatggatttcaacttaatggat |
7326896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 91 - 244
Target Start/End: Complemental strand, 7327321 - 7327168
Alignment:
| Q |
91 |
acttcaatctcatgcataccaacatatctcaagagaaaatttactctccattgatgaatatttgtgataaaaatcccttagggttttggccaattcgatt |
190 |
Q |
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|||||||||||||||| | |||||| | | ||| |||||| | ||||||||||||||||| |||||||| || ||||||||||||| | ||| | | |
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| T |
7327321 |
acttcaatctcatgcaaaacaacatgtttgaagcaaaaattcatcctccattgatgaatattaatgataaaaccccattagggttttggcaacttcaact |
7327222 |
T |
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| Q |
191 |
gggacaaagctctcaacattctcttatggtttcaagtgcacaaagctcctacta |
244 |
Q |
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|||||||||||||||| |||| |||| |||| | ||| |||||||| ||||| |
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| T |
7327221 |
cggacaaagctctcaaccttcttctatgatttccaatgcgcaaagctcatacta |
7327168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 752251 - 752299
Alignment:
| Q |
194 |
acaaagctctcaacattctcttatggtttcaagtgcacaaagctcctac |
242 |
Q |
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|||||||||||||| ||||| ||||||||| ||||||||||||| |||| |
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| T |
752251 |
acaaagctctcaaccttctcctatggtttctagtgcacaaagcttctac |
752299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 28 - 212
Target Start/End: Complemental strand, 51792474 - 51792290
Alignment:
| Q |
28 |
atgaatcatacaaggtcaataaccttattagttctccttacttgacctcaaattcaggtaccaacttcaatctcatgcataccaacatatctcaagagaa |
127 |
Q |
| |
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|||||||| ||||||| |||| ||||| ||| |||||| ||||||| ||||| || || | |||||||||||||||| | ||| ||||||| | |
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| T |
51792474 |
atgaatcacacaaggtagataaacttatcagtactccttccttgaccccaaatccaagttactacttcaatctcatgcaaaattccatgtctcaagcaca |
51792375 |
T |
|
| Q |
128 |
aatttactctccattgatgaatatttgtgataaaaatcccttagggttttggccaattcgattgggacaaagctctcaacattct |
212 |
Q |
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| T |
51792374 |
aacttatcctccaatgatgaatattagtgataaaaaccccttagggttttggccacttcaatcgggacaaagctctcaaccttct |
51792290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 346 - 450
Target Start/End: Complemental strand, 51792081 - 51791977
Alignment:
| Q |
346 |
attacaatggaaatgcaatgataatgcaatcatatcctattgctatgcctactcctccttttcagaatattgcaaacctatctcatgaatatctacttta |
445 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| |||||| |||| ||||||||||||| | |||||||| | |||| || || |||| | |
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| T |
51792081 |
attacaatggaaatgcaatgacaatgcaatcatatcctattactatgcacactcttccttttcagaatctctcaaacctaccacatggatttcaacttaa |
51791982 |
T |
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| Q |
446 |
tggat |
450 |
Q |
| |
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||||| |
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| T |
51791981 |
tggat |
51791977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 398
Target Start/End: Complemental strand, 38292 - 38237
Alignment:
| Q |
343 |
actattacaatggaaatgcaatgataatgcaatcatatcctattgctatgcctact |
398 |
Q |
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||||||| ||||||||||||||| |||||||||||||||||| || |||| |||| |
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| T |
38292 |
actattataatggaaatgcaatgccaatgcaatcatatcctatcgcaatgcatact |
38237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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