View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21316_high_1 (Length: 506)
Name: NF21316_high_1
Description: NF21316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21316_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-178; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 131 - 490
Target Start/End: Complemental strand, 5971347 - 5970988
Alignment:
| Q |
131 |
cttaacacacaatttttgtgtcttaacnnnnnnnnnnnnntgaagctctcaacattacaacaaagttacatcaaccgtagaacaaacagcttcagaggct |
230 |
Q |
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| T |
5971347 |
cttaacacacaatttttgtgtcttaacaataaacaaaaaatgaagctctcaacattacaacaaagttacatcaaccgtagaacaaacagcttcagaggct |
5971248 |
T |
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| Q |
231 |
tagattcagataacggcgccggcgcggttaagtcaccggcgacaattttctggctagtacttcacggcgtttgctgcttaatcagcctcgttctcggctt |
330 |
Q |
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| T |
5971247 |
tagattcagataacggcgccggcgccgttaagtcaccggcgacaattttctggctagtacttcacggcgtttgctgcttaatcagcctcgttctcggctt |
5971148 |
T |
|
| Q |
331 |
ccgattttctcgtctcgttttcttctttctcttttcaacttcatccactaatatttacaccgttccatttacctccggcaccggtgccggaatcactgtt |
430 |
Q |
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| T |
5971147 |
ccgattttctcgtctcgttttcttctttctcttttcaacttcatccactaatatttacaccgttccatttacctccggcaccggtgccggaatcactgtt |
5971048 |
T |
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| Q |
431 |
ccggtggaaactcaacagaatgttctaacaaacgggagttcagtagtggcgagtagagtg |
490 |
Q |
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| T |
5971047 |
ccggtggaaactcaacagaatgttctaacaaacgggagttcagtagtggcgagtagagtg |
5970988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 5971457 - 5971410
Alignment:
| Q |
20 |
tcttcttctccaacttgcttcttactttcacacaacacacgtagtttct |
68 |
Q |
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| T |
5971457 |
tcttcttctccaacttgcttcttactttcacacaaca-acgtagtttct |
5971410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 29537995 - 29538040
Alignment:
| Q |
178 |
ctcaacattacaacaaagttacatcaaccgtagaacaaacagcttc |
223 |
Q |
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| T |
29537995 |
ctcaacattacaacaaagttacatctacggtataacaaatagcttc |
29538040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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