View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21316_high_4 (Length: 281)
Name: NF21316_high_4
Description: NF21316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21316_high_4 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 84 - 265
Target Start/End: Complemental strand, 30320316 - 30320135
Alignment:
| Q |
84 |
gaagtgataatatctccttcnnnnnnnngttggtacaacacaatcttccattcttacttcttactaatcatttttaaaaattataatatacattgatttc |
183 |
Q |
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| T |
30320316 |
gaagtgataatatctccttcttttttttgttggtacaacacaatcttccattcttacttcttactaatcatttttaaaaattataatatacattgatttc |
30320217 |
T |
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| Q |
184 |
gttttaattctaatcgatctaatggatgaatttgtagacttcttattaatcannnnnnnaattgtcatgttaggggtgtata |
265 |
Q |
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| T |
30320216 |
gttttaattctaatcgatctaatggatgaatttgtagacttcttattaatcatttttttaattgtcatgttaggggtgtata |
30320135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 112 - 235
Target Start/End: Complemental strand, 2345454 - 2345331
Alignment:
| Q |
112 |
gttggtacaacacaatcttccattcttacttcttactaatcatttttaaaaattataatatacattgatttcgttttaattctaatcgatctaatggatg |
211 |
Q |
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| T |
2345454 |
gttggtacaacacaatcttccattcttacttcttactaatcatttttaaaaattataatatacattgatttcgttttaattctaatcgatctaatggatg |
2345355 |
T |
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| Q |
212 |
aatttgtagacttcttattaatca |
235 |
Q |
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| T |
2345354 |
aatttgaagacttcttattaatca |
2345331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 115 - 265
Target Start/End: Complemental strand, 3647896 - 3647747
Alignment:
| Q |
115 |
ggtacaacacaatcttccattcttacttcttactaatcatttttaaaaattataatatacattgatttcgttttaattctaatcgatctaatggatgaat |
214 |
Q |
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| T |
3647896 |
ggtacaacacaatcttccattcttacttcttactaatcatttttaaaaattataatatacattgatttcgttttaattctaatcgatctaatggatgaat |
3647797 |
T |
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| Q |
215 |
ttgtagacttcttattaatcannnnnnnaattgtcatgttaggggtgtata |
265 |
Q |
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| T |
3647796 |
ttgtagac-aattattaatcatttttttaattgtcatgttaggggtgtata |
3647747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 142 - 265
Target Start/End: Original strand, 25336569 - 25336692
Alignment:
| Q |
142 |
tcttactaatcatttttaaaaattataatatacattgatttcgttttaattctaatcgatctaatggatgaatttgtagacttcttattaatcannnnnn |
241 |
Q |
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| T |
25336569 |
tcttactaatcatttttaaaaattataatatacattgatttcgttttaattctaatcgatctaatggatgaatttgtagacttcttattaatcatttttt |
25336668 |
T |
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| Q |
242 |
naattgtcatgttaggggtgtata |
265 |
Q |
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| T |
25336669 |
taattgtcatgttaggggtgtata |
25336692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 167
Target Start/End: Original strand, 36355 - 36410
Alignment:
| Q |
112 |
gttggtacaacacaatcttccattcttacttcttactaatcatttttaaaaattat |
167 |
Q |
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| T |
36355 |
gttggtactacacaatctgtcattcttacttcatattaatcatttttaaaaattat |
36410 |
T |
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