View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21316_high_6 (Length: 255)
Name: NF21316_high_6
Description: NF21316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21316_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 21 - 247
Target Start/End: Complemental strand, 28087340 - 28087114
Alignment:
| Q |
21 |
ccagctcccgagggacccatcacagctgaaactcgaccgggcatgattttacctgtcacacacctcagtatatgttttcttttccctttcaaagtaaggg |
120 |
Q |
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| T |
28087340 |
ccagctcccgagggacccatcacagctgaaactcgaccgggcatgattttacctgtcacacacctcagtatatgttttcttttccctttcaaagtaaggg |
28087241 |
T |
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| Q |
121 |
ttacatctttgaaagctacctcgatctcaggcctcgatttaatatcctcctcaacttcagaggccattgaaatcactcctgagaaagtcaagttattgtt |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
28087240 |
ttacatctttgaaagctacctcgatctcaggcctcgatttaatatcctcctcaacttcagaagccattgaaatcactcctgagaaggtcaagttattgtt |
28087141 |
T |
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| Q |
221 |
tttctcttgttgagctttcttcttctc |
247 |
Q |
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|||||||||||||||||||| |||||| |
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| T |
28087140 |
tttctcttgttgagctttctccttctc |
28087114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 142
Target Start/End: Original strand, 41043083 - 41043207
Alignment:
| Q |
18 |
tttccagctcccgagggacccatcacagctgaaactcgaccgggcatgattttacctgtcacacacctcagtatatgttttcttttccctttcaaagtaa |
117 |
Q |
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| T |
41043083 |
tttccagctcctgagggtcccataacagcagaaactcgaccaggcatgattttaccactcacacacctcagtatatgtttgtttttacccttcaatgtca |
41043182 |
T |
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| Q |
118 |
gggttacatctttgaaagctacctc |
142 |
Q |
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|||||| || |||||||||||||| |
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| T |
41043183 |
gggttagattattgaaagctacctc |
41043207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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