View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21316_low_11 (Length: 201)
Name: NF21316_low_11
Description: NF21316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21316_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 99; Significance: 4e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 4e-49
Query Start/End: Original strand, 12 - 182
Target Start/End: Original strand, 21374414 - 21374583
Alignment:
| Q |
12 |
aagcattttatttggttgtctatgcattgtaaccttccaacaaatgccttttaggtgggtagacatttaacctcatattcatcatgccgagaggtgtgga |
111 |
Q |
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| T |
21374414 |
aagcattttatttggttagctatgcatggtaaccttccaacgaatgcatttcgggatggtagacatttaacctcagattcatcatgca-agagctgtgga |
21374512 |
T |
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| Q |
112 |
gctagtattaagtcacttcttcacacctttagagattgcccactctcattggagatttgggatgccttgtt |
182 |
Q |
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| T |
21374513 |
gctagtattgagtcacttcttcacacctttagagattgccctctctcattggcgatctgggatgccttgtt |
21374583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 43 - 182
Target Start/End: Complemental strand, 19817086 - 19816948
Alignment:
| Q |
43 |
accttccaacaaatgccttttaggtgggtagacatttaacctcatattcatcatgccgagaggtgtggagctagtattaagtcacttcttcacaccttta |
142 |
Q |
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| T |
19817086 |
accttccaacaaatgcttttcgggctagtagacatttaacctcagattcatcatgca-agagatgtggagctaatattgagtcacttcttcacaccttta |
19816988 |
T |
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| Q |
143 |
gagattgcccactctcattggagatttgggatgccttgtt |
182 |
Q |
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| T |
19816987 |
gagattgccctctctcattggcgatctgggatgccttgtt |
19816948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 15 - 182
Target Start/End: Original strand, 54874672 - 54874838
Alignment:
| Q |
15 |
cattttatttggttgtctatgcattgtaaccttccaacaaatgccttttaggtgggtagacatttaacctcatattcatcatgccgagaggtgtggagct |
114 |
Q |
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| T |
54874672 |
cattttatttggttggctgtgcatggtaaccttccaacgaattcttttcgggctagtagacatttaacctcagattcatcatgca-agagatgtggagct |
54874770 |
T |
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| Q |
115 |
agtattaagtcacttcttcacacctttagagattgcccactctcattggagatttgggatgccttgtt |
182 |
Q |
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| T |
54874771 |
aatattgagtcacttcttcacacctttagagattgccctctctcattggcgatctgggatgccttgtt |
54874838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 4e-37; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 12 - 182
Target Start/End: Complemental strand, 26293052 - 26292883
Alignment:
| Q |
12 |
aagcattttatttggttgtctatgcattgtaaccttccaacaaatgccttttaggtgggtagacatttaacctcatattcatcatgccgagaggtgtgga |
111 |
Q |
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| T |
26293052 |
aagcattttatttggttggctatgcatggtaaccttccaacgaatgcatttcgagctggcaaacatttaacctcagattcatcatgca-agagatgtgga |
26292954 |
T |
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| Q |
112 |
gctagtattaagtcacttcttcacacctttagagattgcccactctcattggagatttgggatgccttgtt |
182 |
Q |
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| T |
26292953 |
gctagtattgagtcacttcttcacacttttagagattgccctctctctttggcgatctgggatgacttgtt |
26292883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 7021742 - 7021828
Alignment:
| Q |
12 |
aagcattttatttggttgtctatgcattgtaaccttccaacaaatgccttttaggtgggtagacatttaacctcatattcatcatgc |
98 |
Q |
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| T |
7021742 |
aagcattttatttggttggctatgcatggtaaccttccaacgaatgcatttcgggctgatagacatttaacctcagattcatcatgc |
7021828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 183
Target Start/End: Original strand, 7022200 - 7022280
Alignment:
| Q |
106 |
tgtggagctagtattaagtcact---tcttcacacctttagagattgcccactctcattggagatttgggatgccttgttt |
183 |
Q |
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| T |
7022200 |
tgtggagctagtattgagtcactacttcttcacacttttagagattgccctctctctttggcgatctgcgatgccttgttt |
7022280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 15918023 - 15917859
Alignment:
| Q |
18 |
tttatttggttgtctatgcattgtaaccttccaacaaatgccttttaggtgggtagacatttaacctcatattcatcatgccgagaggtgtggagctagt |
117 |
Q |
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| T |
15918023 |
tttattttgttggctatgcatggtaaccttccaacgaatgcatttagtgctagtagatatttaaccttatattcatcatgca-agagatgtggatctagt |
15917925 |
T |
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| Q |
118 |
attaagtcacttcttcacacc-tttagagattgcccactctcattggagatttgggatgccttgtt |
182 |
Q |
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| T |
15917924 |
attgagtcactttttcacaccttttggagttttccatctctcattggcgatctgggatgccttgtt |
15917859 |
T |
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