View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21317_high_11 (Length: 278)
Name: NF21317_high_11
Description: NF21317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21317_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 88 - 263
Target Start/End: Complemental strand, 22934886 - 22934711
Alignment:
| Q |
88 |
tcatgtgttatcaaatgaagaagttccaagataggaacttgaatttgtcttatcaaatgatgaagttccaagagagtgcaaaaattcatcaaacccctct |
187 |
Q |
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| T |
22934886 |
tcatgtgttatcaaatgaagaagttccaagataggagcttgaattagtcttatcaaatgaagaagttccaagagaatgcaaaaactcatcaaacccctct |
22934787 |
T |
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| Q |
188 |
tgtgaatcaatacctcctggctttctcatttcatttggtaactcaacttctccatccaaaatcctcactacttgtc |
263 |
Q |
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| T |
22934786 |
tgtgaatcaatacctcttggctttctcatttcatttggtaactcaacttctccatccaaaatcctcactacttgtc |
22934711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 149 - 263
Target Start/End: Original strand, 22920766 - 22920880
Alignment:
| Q |
149 |
gaagttccaagagagtgcaaaaattcatcaaacccctcttgtgaatcaatacctcctggctttctcatttcatttggtaactcaacttctccatccaaaa |
248 |
Q |
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| T |
22920766 |
gaagttccaagagaattcaagaattcatcaaatccttcttgtgaatcaataccacctggttttctcatttcatttggtaactcaacttctccatccaaaa |
22920865 |
T |
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| Q |
249 |
tcctcactacttgtc |
263 |
Q |
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| T |
22920866 |
tcctcactacttgtc |
22920880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 160 - 263
Target Start/End: Original strand, 15626852 - 15626955
Alignment:
| Q |
160 |
agagtgcaaaaattcatcaaacccctcttgtgaatcaatacctcctggctttctcatttcatttggtaactcaacttctccatccaaaatcctcactact |
259 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||| ||||||| || |||| |||| || |||||||||||||||||||||||||||| ||| |
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| T |
15626852 |
agagtgcaaaaattcatcaaacccctgttgtggatcaataactcctggattactcaaatcatcaggcaactcaacttctccatccaaaatcctcatcact |
15626951 |
T |
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| Q |
260 |
tgtc |
263 |
Q |
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|||| |
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| T |
15626952 |
tgtc |
15626955 |
T |
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