View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21317_high_12 (Length: 249)

Name: NF21317_high_12
Description: NF21317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21317_high_12
NF21317_high_12
[»] chr8 (6 HSPs)
chr8 (11-249)||(30634233-30634471)
chr8 (11-227)||(1175000-1175219)
chr8 (18-117)||(1173508-1173607)
chr8 (11-77)||(35673336-35673402)
chr8 (28-85)||(35674858-35674915)
chr8 (46-111)||(44687154-44687219)
[»] chr1 (4 HSPs)
chr1 (11-227)||(44782187-44782405)
chr1 (11-227)||(46679591-46679808)
chr1 (48-111)||(33773206-33773269)
chr1 (153-209)||(9217542-9217597)
[»] chr5 (8 HSPs)
chr5 (11-227)||(25725812-25726028)
chr5 (11-227)||(40382761-40382977)
chr5 (11-209)||(10410708-10410904)
chr5 (11-182)||(25502029-25502199)
chr5 (14-209)||(10412281-10412474)
chr5 (11-182)||(25506942-25507113)
chr5 (11-111)||(8081508-8081608)
chr5 (11-77)||(6742582-6742648)
[»] chr2 (12 HSPs)
chr2 (11-227)||(45035046-45035261)
chr2 (11-227)||(45033251-45033466)
chr2 (11-182)||(1015657-1015827)
chr2 (22-164)||(33187188-33187330)
chr2 (11-182)||(17308630-17308793)
chr2 (11-182)||(30191518-30191686)
chr2 (11-78)||(14007778-14007845)
chr2 (47-111)||(25302815-25302879)
chr2 (46-109)||(41602457-41602520)
chr2 (46-111)||(25306810-25306875)
chr2 (136-182)||(4399574-4399620)
chr2 (11-76)||(3372456-3372521)
[»] chr4 (5 HSPs)
chr4 (11-179)||(4847692-4847860)
chr4 (130-227)||(11809887-11809984)
chr4 (11-182)||(28395557-28395731)
chr4 (65-205)||(25054251-25054389)
chr4 (46-111)||(8005909-8005974)
[»] chr7 (4 HSPs)
chr7 (18-227)||(29924538-29924729)
chr7 (18-182)||(21464441-21464611)
chr7 (150-209)||(964997-965055)
chr7 (46-111)||(30511162-30511227)
[»] chr6 (5 HSPs)
chr6 (18-182)||(34350345-34350509)
chr6 (11-164)||(15688987-15689140)
chr6 (103-182)||(24544664-24544742)
chr6 (35-111)||(9373599-9373675)
chr6 (131-176)||(31528826-31528873)
[»] chr3 (6 HSPs)
chr3 (11-182)||(28133655-28133826)
chr3 (11-210)||(4602202-4602399)
chr3 (11-227)||(27682085-27682297)
chr3 (11-108)||(41874519-41874616)
chr3 (11-164)||(4609059-4609211)
chr3 (46-111)||(35244170-35244235)
[»] scaffold0570 (1 HSPs)
scaffold0570 (84-164)||(3010-3094)


Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 11 - 249
Target Start/End: Original strand, 30634233 - 30634471
Alignment:
Q  11 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaaga 110  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||  |||||||||||||||||||||||||||||||    
T  30634233 atgaatcaaaggattctatggttttaggtcaaatgcaatggaaagatagattctgtaattctctctatgagtcattactaagaaacaattgtataaaaga 30634332  T
Q  111 taatgaaataatgcataggtgtagcttatttatagtgacttggagtaactaactccccaactaactttctacatagataacttgctctccaagttatctt 210  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  30634333 taatgaaatagtacataggtgtagcttatttatagtgacttggagtaactaactccctaactaactttctacatagataacttgctctccaagttatctt 30634432  T
Q  211 cttcactatactctaattaatatcttcaaaatatgtgcc 249  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30634433 cttcactatactctaattaatatcttcaaaatatgtgcc 30634471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 1175219 - 1175000
Alignment:
Q  11 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattacta---agaaacaattgtataaa 107  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||| | ||||| |||||||| ||   |||||||||||||||||    
T  1175219 atgaattaaaggattctatggttctaggtcaaatgtaatgaaaagatagattgtgtaattttttctaggagtcattattaccaagaaacaattgtataaa 1175120  T
Q  108 agataatgaaataatgcataggtgtagcttatttatagtgacttggagtaactaactccccaactaactttctacatagataacttgctctccaagttat 207  Q
    ||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1175119 agataatgaaatagtacataggtgtaacttatttatagtgacttggagtaactaactccccacctaactttctacatagataacttgctctccaagttat 1175020  T
Q  208 cttcttcactatactctaat 227  Q
    ||||||||||||||||||||    
T  1175019 cttcttcactatactctaat 1175000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 1173607 - 1173508
Alignment:
Q  18 aaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaagataatgaa 117  Q
    ||||||||| ||  |||||| |||||||||||| ||| ||||||||  ||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  1173607 aaaggattccataattctagatcaaatgcaatgaaaaaatagattgtataattctctctaggagtcattaccaagaaacaattgtataaaagataatgaa 1173508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 35673336 - 35673402
Alignment:
Q  11 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctcta 77  Q
    ||||| || ||||||| ||||||||| ||||||||||||||||||||||||||  ||||||||||||    
T  35673336 atgaaatagaggattccatggttctaagtcaaatgcaatggaaagatagattgtataattctctcta 35673402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 35674858 - 35674915
Alignment:
Q  28 atggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcat 85  Q
    ||||||||| |||||||||||||||||| ||||||| |||||||||||||| ||||||    
T  35674858 atggttctaagtcaaatgcaatggaaaggtagattgtgtaattctctctaggagtcat 35674915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 44687219 - 44687154
Alignment:
Q  46 caatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaagat 111  Q
    ||||||||||||||| ||| |||| |||||||| | |||| |||||||||||||||||||||||||    
T  44687219 caatggaaagatagaatgcataatgctctctaggaatcatcactaagaaacaattgtataaaagat 44687154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 44782187 - 44782405
Alignment:
Q  11 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaaga 110  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  44782187 atgaattaaaggattccatggttctaggtcaaatgcaatggaaagatagattgtgtaattctctctaggagtcattactaagaaacaattgtataaaaga 44782286  T
Q  111 taatgaaataatgcataggtgtagcttatttatagtgacttggagtaactaactccccaactaactttctacatagataacttgctctccaagttatct- 209  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||     
T  44782287 taatgaaatagtacataggtgtagcttatttatagtgacttggagtaactaactccctaactaactttctacatagataacttgctctctaagttatctt 44782386  T
Q  210 -tcttcactatactctaat 227  Q
     ||||||||||||||||||    
T  44782387 ctcttcactatactctaat 44782405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 46679808 - 46679591
Alignment:
Q  11 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaaga 110  Q
    |||||| ||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||    
T  46679808 atgaatcaaaggattccatggttctagatcaaatgcaatggaaagatagattgtgtaattctctctaggagtcattaccaagaaacaattgtataaaaga 46679709  T
Q  111 taatgaaataatgcataggtgtagcttatttatagtgacttggagtaactaactccccaactaactttctac-atagataacttgctctccaagttatct 209  Q
    | ||||| || | |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||| |  ||||||| |||||||||||    
T  46679708 tgatgaagtagtacataggtgtagcttatttatagtgacttggagtaactaactccctaactaattttctactatagtttgcttgctccccaagttatct 46679609  T
Q  210 tcttcactatactctaat 227  Q
    ||||||||||||||||||    
T  46679608 tcttcactatactctaat 46679591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 48 - 111
Target Start/End: Complemental strand, 33773269 - 33773206
Alignment:
Q  48 atggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaagat 111  Q
    ||||||||||||| ||| |||| |||||||| |||||| ||||| |||||||||||||||||||    
T  33773269 atggaaagatagaatgcataatactctctaggagtcatcactaaaaaacaattgtataaaagat 33773206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 9217597 - 9217542
Alignment:
Q  153 gagtaactaactccccaactaactttctacatagataacttgctctccaagttatct 209  Q
    |||||| |||||||| |||||||||||||| ||||| |||||||||||||| |||||    
T  9217597 gagtaattaactccctaactaactttctac-tagattacttgctctccaagatatct 9217542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 25725812 - 25726028
Alignment:
Q  11 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaaga 110  Q
    |||||| ||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||| ||||||||||    
T  25725812 atgaatcaaaggattccatggttctagatcaaatgcaatggaaagatagattgtgtaattctctctaggagtcattaccaagaaacaatcgtataaaaga 25725911  T
Q  111 taatgaaataatgcataggtgtagcttatttatagtgacttggagtaactaactccccaactaactttctacatagataacttgctctccaagttatctt 210  Q
    |||||||||| | |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  25725912 taatgaaatagtacataggtgtaacttatttatagtgacttggagtaactaactccctaactaactttctacatagataacttgctctccaagttatctt 25726011  T
Q  211 cttcactatactctaat 227  Q
    |||||||||||||||||    
T  25726012 cttcactatactctaat 25726028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 40382761 - 40382977
Alignment:
Q  11 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaaga 110  Q
    |||||| ||||||||  || |||||||||||||||||||||||||||| |||| |||||||||||||| | |||||||||||||||||||||| ||||||    
T  40382761 atgaatcaaaggattacattgttctaggtcaaatgcaatggaaagataaattgtgtaattctctctaggaatcattactaagaaacaattgtaaaaaaga 40382860  T
Q  111 taatgaaataatgcataggtgtagcttatttatagtgacttggagtaactaactccccaactaactttctacatagataacttgctctccaagttatctt 210  Q
    |||||||||| |  ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||| ||||||    
T  40382861 taatgaaatagtatataggtgtagcttatttatagtgacttggagtacctaactccctaactaactttctacatagataacttactctccaagatatctt 40382960  T
Q  211 cttcactatactctaat 227  Q
    |||||||||||||||||    
T  40382961 cttcactatactctaat 40382977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 10410904 - 10410708
Alignment:
Q  11 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaaga 110  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||  | ||||  ||| || ||||||||    
T  10410904 atgaatcaaaggattccatggttctaggtcaaatgcaatggaaagatagattgtgtaattctctctaggagtcatcccaaagatgcaaatgaataaaaga 10410805  T
Q  111 taatgaaataatgcataggtgtagcttatttatagtgacttggagtaactaactccccaactaactttctacatagataacttgctctccaagttatct 209  Q
    |  ||||||| | ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||| | ||||||||||||||||||||    
T  10410804 t-gtgaaatagtacataggtgtagcttatttatagtgatttggagtaactaactccctaactaactttctac-taggttacttgctctccaagttatct 10410708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 11 - 182
Target Start/End: Original strand, 25502029 - 25502199
Alignment:
Q  11 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaaga 110  Q
    |||||| | ||||||| |||||||||| |||||||||||||||| |||||||| |||||||||||||| ||||||||  |||||||||||||||||||||    
T  25502029 atgaatcagaggattccatggttctagatcaaatgcaatggaaatatagattgtgtaattctctctaggagtcattatcaagaaacaattgtataaaaga 25502128  T
Q  111 taatgaaataatgcataggtgtagcttatttatagtgacttggagtaactaactccccaactaactttctac 182  Q
    | ||| |||| | ||||| |||| |||||||||||||| |||||||||||||||||| ||||||||||||||    
T  25502129 t-atggaatagtacatagatgtaacttatttatagtgaattggagtaactaactccctaactaactttctac 25502199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 14 - 209
Target Start/End: Complemental strand, 10412474 - 10412281
Alignment:
Q  14 aattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaagataa 113  Q
    ||||||||||||  |||||| ||||||||||||||| ||||||||||||| |||||| ||||||  | | || || ||||  ||| || ||||||||||     
T  10412474 aattaaaggatttcatggttttaggtcaaatgcaatcgaaagatagattgtgtaattttctctaagaattatcacaaagatgcaaatgaataaaagata- 10412376  T
Q  114 tgaaataatgcataggtgtagcttatttatagtgacttggagtaactaactccccaactaactttctacatagataacttgctctccaagttatct 209  Q
    ||||||| | ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||| | ||||||||||||||||||||    
T  10412375 tgaaatagtacataggtgtagcttatttatagtgatttggagtaactaactccctaactaactttctac-taggttacttgctctccaagttatct 10412281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 11 - 182
Target Start/End: Original strand, 25506942 - 25507113
Alignment:
Q  11 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaaga 110  Q
    |||||| ||||||||| |||||| ||| ||||||||||||||||||||||||  |||||||||||| | | ||||||| ||||||||||||||||||| |    
T  25506942 atgaataaaaggattccatggttttagatcaaatgcaatggaaagatagattatgtaattctctctgggattcattacaaagaaacaattgtataaaaaa 25507041  T
Q  111 taatgaaataatgcataggtgtagcttatttatagtgacttggagtaact-aactccccaactaactttctac 182  Q
    | ||| |||| | ||||||||||||||||||||||||| ||||||||||| ||||||| || |||||||||||    
T  25507042 t-atggaatagtacataggtgtagcttatttatagtgaattggagtaactaaactccctaagtaactttctac 25507113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 8081608 - 8081508
Alignment:
Q  11 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaaga 110  Q
    |||||| ||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  8081608 atgaatcaaagggttccatggttctaggtcaaatgcaatggaaagatagattgtgtaattctctctaggagtcattactaagaaacaattgtataaaaga 8081509  T
Q  111 t 111  Q
    |    
T  8081508 t 8081508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 6742648 - 6742582
Alignment:
Q  11 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctcta 77  Q
    |||||| ||| ||||| || ||||||| ||||||||||||||||||||||||| ||| |||||||||    
T  6742648 atgaatcaaacgattccatagttctagatcaaatgcaatggaaagatagattgtgtatttctctcta 6742582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 133; Significance: 3e-69; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 45035261 - 45035046
Alignment:
Q  11 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaaga 110  Q
    |||||| ||||||||| |||||||||| |||||||||||||||||||||||||  || |||||||||| |||||| || ||||  ||| || ||||||||    
T  45035261 atgaatcaaaggattccatggttctagatcaaatgcaatggaaagatagattgtatagttctctctaggagtcatcacaaagatgcaaatgaataaaaga 45035162  T
Q  111 taatgaaataatgcataggtgtagcttatttatagtgacttggagtaactaactccccaactaactttctacatagataacttgctctccaagttatctt 210  Q
    |  ||||||| | ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  45035161 tt-tgaaatattacataggtgtagcttatttatagtgatttggagtaactaactccctaactaactttctacatagataacttgctctccaagttatctt 45035063  T
Q  211 cttcactatactctaat 227  Q
    || ||||||||||||||    
T  45035062 ctacactatactctaat 45035046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 45033466 - 45033251
Alignment:
Q  11 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaaga 110  Q
    |||||| ||| ||||| |||||||||| |||||||||||||||||||||||||  ||||| ||||||| |||||| || ||||  ||| || ||||||||    
T  45033466 atgaatcaaaagattccatggttctagatcaaatgcaatggaaagatagattgtataattttctctaggagtcatcacaaagatgcaaatgaataaaaga 45033367  T
Q  111 taatgaaataatgcataggtgtagcttatttatagtgacttggagtaactaactccccaactaactttctacatagataacttgctctccaagttatctt 210  Q
    || |||| || | ||||||||||||||||||| ||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  45033366 ta-tgaattagtacataggtgtagcttatttacagtgatttggggtaactaactccctaactaactttctacatagataacttgctctccaagttatctt 45033268  T
Q  211 cttcactatactctaat 227  Q
    |||||||||||||||||    
T  45033267 cttcactatactctaat 45033251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 11 - 182
Target Start/End: Complemental strand, 1015827 - 1015657
Alignment:
Q  11 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaaga 110  Q
    |||||| ||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||| | |||| |||| |||||||||||||||||||||    
T  1015827 atgaatcaaaggattccatggttctagatcaaatgcaatggaaagatagattgtgtaattctctcttggagtcgttaccaagaaacaattgtataaaaga 1015728  T
Q  111 taatgaaataatgcataggtgtagcttatttatagtgacttggagtaactaactccccaactaactttctac 182  Q
    | ||| |||| | ||||||||| ||||||||||||||| |||||||||||||||||  ||||||||||||||    
T  1015727 t-atggaatagtacataggtgtggcttatttatagtgatttggagtaactaactccgtaactaactttctac 1015657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 22 - 164
Target Start/End: Original strand, 33187188 - 33187330
Alignment:
Q  22 gattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaagataatgaaataa 121  Q
    ||||| || ||||||||||||||| ||||||||||||||||| |||||| ||||||  ||||||||| |||||||||||||||||||||||||||||||     
T  33187188 gattccattgttctaggtcaaatgtaatggaaagatagattgtgtaattatctctatgagtcattaccaagaaacaattgtataaaagataatgaaatag 33187287  T
Q  122 tgcataggtgtagcttatttatagtgacttggagtaactaact 164  Q
    | |||||||||||||||||||||||||||||||||||||||||    
T  33187288 tacataggtgtagcttatttatagtgacttggagtaactaact 33187330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 11 - 182
Target Start/End: Complemental strand, 17308793 - 17308630
Alignment:
Q  11 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaaga 110  Q
    |||||| ||||||||| || ||||||| ||||||||||||||||||||||||| ||||||| |||||| ||||||||| |||||||||||||||||||||    
T  17308793 atgaatcaaaggattccattgttctagatcaaatgcaatggaaagatagattgtgtaattcactctaggagtcattaccaagaaacaattgtataaaaga 17308694  T
Q  111 taatgaaataatgcataggtgtagcttatttatagtgacttggagtaactaactccccaactaactttctac 182  Q
    | ||||       || ||||||  |||||||||||||| |||||||||||||||||| ||||||||||||||    
T  17308693 t-atga-------caaaggtgtgacttatttatagtgatttggagtaactaactccctaactaactttctac 17308630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 182
Target Start/End: Complemental strand, 30191686 - 30191518
Alignment:
Q  11 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaaga 110  Q
    |||||| ||||||||| |||||||||| |||||| ||||| |||||||||||   |||||||||||| || ||||||| |||||||||||||||||||||    
T  30191686 atgaatcaaaggattccatggttctagatcaaatacaatgaaaagatagattatataattctctctaaaaatcattaccaagaaacaattgtataaaaga 30191587  T
Q  111 taatgaaataatgcataggtgtagcttatttatagtgacttggagtaactaactccccaactaactttctac 182  Q
    | || |||| || || ||| ||   ||||||||||||| ||||  ||||||| |||| ||||||||||||||    
T  30191586 t-ataaaat-atacacagg-gtgatttatttatagtgatttggcataactaaatccctaactaactttctac 30191518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 14007845 - 14007778
Alignment:
Q  11 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctag 78  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||| |||||  |||||||||||||    
T  14007845 atgaatcaaaggattccatggttctaggtcaaatgcaatggaaagatggattgtctaattctctctag 14007778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 25302879 - 25302815
Alignment:
Q  47 aatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaagat 111  Q
    |||||||||||||| ||| |||| |||||||| |||||| |||||||||||||||||||||||||    
T  25302879 aatggaaagatagaatgcataatgctctctaggagtcatcactaagaaacaattgtataaaagat 25302815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 41602520 - 41602457
Alignment:
Q  46 caatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaag 109  Q
    ||||||||||||||| ||| |||| |||||||| |||||| |||||||||||||||||||||||    
T  41602520 caatggaaagatagaatgcataatgctctctaggagtcatcactaagaaacaattgtataaaag 41602457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 25306875 - 25306810
Alignment:
Q  46 caatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaagat 111  Q
    ||||||||||||||| ||| |||| |||||||  |||||| |||||||||||||||||||||||||    
T  25306875 caatggaaagatagaatgcataatgctctctatgagtcatcactaagaaacaattgtataaaagat 25306810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 4399574 - 4399620
Alignment:
Q  136 ttatttatagtgacttggagtaactaactccccaactaactttctac 182  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||    
T  4399574 ttatttatagtgagttggagtaactaactccctaactaactttctac 4399620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 3372456 - 3372521
Alignment:
Q  11 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctct 76  Q
    |||||| ||| ||||| || |||||||||||||| |||||||||||||||||   |||||||||||    
T  3372456 atgaatcaaaagattccatagttctaggtcaaatacaatggaaagatagattctataattctctct 3372521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 11 - 179
Target Start/End: Original strand, 4847692 - 4847860
Alignment:
Q  11 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaaga 110  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||||  |||||||||| ||||||||||||| |||||||||||||||| ||||    
T  4847692 atgaattaaaggattccatggttctaggtcaaatgtaatggaaagatagattttgtaattctctatagaagtcattaccaagaaacaattgtatataaga 4847791  T
Q  111 taatgaaataatgcataggtgtagcttatttatagtgacttggagtaactaactccccaactaactttc 179  Q
    || ||| ||| | ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4847792 tagtgatatagtacatagatgtagcttatttatagtgacttggagtaactaactccctaactaactttc 4847860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 130 - 227
Target Start/End: Original strand, 11809887 - 11809984
Alignment:
Q  130 tgtagcttatttatagtgacttggagtaactaactccccaactaactttctacatagataacttgctctccaagttatcttcttcactatactctaat 227  Q
    ||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11809887 tgtagtttgtttatagtgacttggagtaactaactccctaactaactttctacatagataacttgctctccaagttatcttcttcactatactctaat 11809984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 182
Target Start/End: Original strand, 28395557 - 28395731
Alignment:
Q  11 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattacta----agaaacaattgtataa 106  Q
    |||||| ||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| || |    ||| | || || ||||    
T  28395557 atgaatcaaaggattccatggttttaggtcaaatgcaatggaaagatagattgtgtaattctctctaggagtcatcacaaagatagatagaaatgaataa 28395656  T
Q  107 aagataatgaaataatgcataggtgtagcttatttatagtgacttggagtaactaactccccaactaactttctac 182  Q
    ||||| |||||||| | ||  ||||||||||||||||||||| ||||||||| |||||||| |||||| |||||||    
T  28395657 aagat-atgaaatagtacagtggtgtagcttatttatagtgatttggagtaaataactccctaactaattttctac 28395731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 65 - 205
Target Start/End: Complemental strand, 25054389 - 25054251
Alignment:
Q  65 gtaattctctctagaagtcattactaagaaacaattgtataaaagataatgaaataatgcataggtgtagcttatttatagtgacttggagtaactaact 164  Q
    |||||||||||| |||||||| || ||||  |||||| |||||||||  ||||||| | ||||||||||||||||||||||||| |||||||||||||||    
T  25054389 gtaattctctctggaagtcatcacaaagatgcaattgaataaaagatg-tgaaatagtacataggtgtagcttatttatagtgatttggagtaactaact 25054291  T
Q  165 ccccaactaactttctacatagataacttgctctccaagtt 205  Q
    ||| ||||||| |||||| ||  | ||||||||||||||||    
T  25054290 ccctaactaacgttctac-tatgttacttgctctccaagtt 25054251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 8005974 - 8005909
Alignment:
Q  46 caatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaagat 111  Q
    ||||||||||||||| ||| |||| |||||||| |||||| || |||||||||||| |||||||||    
T  8005974 caatggaaagatagaatgcataatgctctctaggagtcatcacaaagaaacaattgaataaaagat 8005909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 29924729 - 29924538
Alignment:
Q  18 aaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaagataatgaa 117  Q
    ||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||| ||||||||||||| ||    
T  29924729 aaaggattccatagttctaggtcaaatgcaatggaaagatagattgtgtaattctctctaggagtcattactaaaaaacaattatataaaagataataaa 29924630  T
Q  118 ataatgcataggtgtagcttatttatagtgacttggagtaactaactccccaactaactttctacatagataacttgctctcc-aagttatcttcttcac 216  Q
           ||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29924629 -------ataggtgtagcttatttatagtgacttggagt------------aactaactttctacatagataacttgctctccaaagttatcttcttcac 29924549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 21464611 - 21464441
Alignment:
Q  18 aaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattct--ctctagaagtcattactaag-----aaacaattgtataaaaga 110  Q
    |||| |||| |||||||||| ||||||||||||||||||||||||| ||||||||  |||||| ||||||||| |||     |||  | || ||||||||    
T  21464611 aaagaattccatggttctagatcaaatgcaatggaaagatagattgtgtaattctctctctaggagtcattacaaaggtagaaaatgaatgaataaaaga 21464512  T
Q  111 taatgaaataatgcataggtgtagcttatttatagtgacttggagtaactaactccccaactaactttctac 182  Q
     | | ||||| | |||| |||||||||||||| ||||| |||||||||||||| ||| ||||||||||||||    
T  21464511 -agtaaaatagtacataagtgtagcttatttacagtgatttggagtaactaaccccctaactaactttctac 21464441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 150 - 209
Target Start/End: Complemental strand, 965055 - 964997
Alignment:
Q  150 ttggagtaactaactccccaactaactttctacatagataacttgctctccaagttatct 209  Q
    |||||||||||||||||| |||||||||||||| || || ||||||||||||||||||||    
T  965055 ttggagtaactaactccctaactaactttctac-tatattacttgctctccaagttatct 964997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 30511227 - 30511162
Alignment:
Q  46 caatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaagat 111  Q
    ||||| ||||||||| ||| ||||  ||||||| ||| || | |||||||||||||||||||||||    
T  30511227 caatgaaaagatagaatgcataatgttctctaggagttatcagtaagaaacaattgtataaaagat 30511162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 4e-50; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 34350345 - 34350509
Alignment:
Q  18 aaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaagataatgaa 117  Q
    ||||||||| ||||||||||||||||| ||| ||||| |||| ||  |||||||||| ||| ||||||||||||||||||||||||||||||||| ||||    
T  34350345 aaaggattccatggttctaggtcaaatacaacggaaaaatagtttatgtaattctctttaggagtcattactaagaaacaattgtataaaagatagtgaa 34350444  T
Q  118 ataatgcataggtgtagcttatttatagtgacttggagtaactaactccccaactaactttctac 182  Q
    ||| | ||||||||||| ||||||||| ||| |||||||||||||||||| ||||||||||||||    
T  34350445 atagtacataggtgtagtttatttataatgatttggagtaactaactccctaactaactttctac 34350509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 11 - 164
Target Start/End: Complemental strand, 15689140 - 15688987
Alignment:
Q  11 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaaga 110  Q
    |||||| ||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||| || |||| | || || |||||| |    
T  15689140 atgaatcaaaggattccatgattctaggtcaaatgcaatggaaagatagattgtgtaattctctctag-agtcatcacaaagatagaaatgaataaaaaa 15689042  T
Q  111 ta-atgaaataatgcataggtgtagcttatttatagtgacttggagtaactaact 164  Q
     | |  ||||| | |||||| |||||||||||||||||| |||||||||||||||    
T  15689041 gatagaaaatagtacataggagtagcttatttatagtgatttggagtaactaact 15688987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 103 - 182
Target Start/End: Complemental strand, 24544742 - 24544664
Alignment:
Q  103 ataaaagataatgaaataatgcataggtgtagcttatttatagtgacttggagtaactaactccccaactaactttctac 182  Q
    |||||||||| ||||||| | ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  24544742 ataaaagata-tgaaatagtacataggtgtagcttatttatagtgatttggagtaactaactccctaactaactttctac 24544664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 111
Target Start/End: Original strand, 9373599 - 9373675
Alignment:
Q  35 taggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaagat 111  Q
    |||||||||||||||||||||||||| || |||||| ||| ||| |||||| || |||| | || || |||||||||    
T  9373599 taggtcaaatgcaatggaaagatagaatgtgtaattttctataggagtcataacaaagatataaatgaataaaagat 9373675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 31528873 - 31528826
Alignment:
Q  131 gtagcttatttatagtg--acttggagtaactaactccccaactaact 176  Q
    ||||||||||||||| |  |||||||||||||||||||| ||||||||    
T  31528873 gtagcttatttatagagtaacttggagtaactaactccctaactaact 31528826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 3e-47; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 11 - 182
Target Start/End: Complemental strand, 28133826 - 28133655
Alignment:
Q  11 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaaga 110  Q
    |||||| ||||||||| |||||||||| ||||||||||||||||| || |||| ||| |||||||||| |||||| || ||||  |||||| ||||||||    
T  28133826 atgaatcaaaggattccatggttctagatcaaatgcaatggaaaggtaaattgtgtagttctctctaggagtcatcacaaagatgcaattgaataaaaga 28133727  T
Q  111 taatgaaataatgcataggtgtagcttatttatagtgacttggagtaactaactccccaactaactttctac 182  Q
    |  ||||||| | |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  28133726 tggtgaaatagtacataggtgtagcttatttatagtgacttggagtaactaactctctaactaactttctac 28133655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 11 - 210
Target Start/End: Complemental strand, 4602399 - 4602202
Alignment:
Q  11 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaaga 110  Q
    |||||| ||||||||| |||||||||| ||||||||||||||||| || ||||  || |||||||||  |||||| || ||||  |||||  ||||||||    
T  4602399 atgaatcaaaggattccatggttctagatcaaatgcaatggaaaggtaaattgtatagttctctctatgagtcataacaaagatgcaattaaataaaaga 4602300  T
Q  111 taatgaaataatgcataggtgtagcttatttatagtgacttggagtaactaactccccaactaactttctacatagataacttgctctccaagttatctt 210  Q
    || ||||||| | ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||  | |||||||||||||||||||||    
T  4602299 ta-tgaaatagtacataggtgtagcttatttatagtgatttggagtaactaactccctaactaactttctac-tatgttacttgctctccaagttatctt 4602202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 27682297 - 27682085
Alignment:
Q  11 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaaga 110  Q
    |||||| ||||||||| |||||||||| ||||||||||||||||| || |||| ||| |||||||||| |||||| || ||||  ||| || ||||||||    
T  27682297 atgaatcaaaggattccatggttctagatcaaatgcaatggaaaggtaaattgtgtagttctctctaggagtcatcacaaagatgcaaatgaataaaaga 27682198  T
Q  111 taatgaaataatgcataggtgtagcttatttatagtgacttggagtaactaactccccaactaactttctacatagataacttgctctccaagttatctt 210  Q
    |  || |||| | ||||||| | |||||||||| |||| |||||||||||||||||| |||||||||| ||| |||||  |||||||||||||||||||     
T  27682197 t-gtggaatagtacataggtcttgcttatttattgtgatttggagtaactaactccctaactaactttatac-tagattgcttgctctccaagttatct- 27682101  T
Q  211 cttcactatactctaat 227  Q
      |||||||||||||||    
T  27682100 -ctcactatactctaat 27682085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 11 - 108
Target Start/End: Complemental strand, 41874616 - 41874519
Alignment:
Q  11 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaa 108  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||| |||||||||||||||||||    
T  41874616 atgaatcaaaggattccatggttctaggtcaaatgcaatggaaagatagattttgtaattctctctaggagtcattaccaagaaacaattgtataaaa 41874519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 164
Target Start/End: Complemental strand, 4609211 - 4609059
Alignment:
Q  11 atgaattaaaggattctatggttctaggtcaaatgcaatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaaga 110  Q
    |||||| ||||||||| || ||||||| ||||||||||| ||||| || ||||  || |||||||||| |||||| || ||||  |||||| ||||||||    
T  4609211 atgaatcaaaggattcaattgttctagatcaaatgcaattgaaaggtaaattgtatagttctctctagcagtcatcacaaagatgcaattgaataaaaga 4609112  T
Q  111 taatgaaataatgcataggtgtagcttatttatagtgacttggagtaactaact 164  Q
    || ||||||| | ||||||||||||||||||||||||| |||||||||||||||    
T  4609111 ta-tgaaatagtacataggtgtagcttatttatagtgatttggagtaactaact 4609059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 35244235 - 35244170
Alignment:
Q  46 caatggaaagatagattgcgtaattctctctagaagtcattactaagaaacaattgtataaaagat 111  Q
    ||||||||||||||| ||| |||| |||||||| |||||| ||||||||| |||| ||||||||||    
T  35244235 caatggaaagatagaatgcataatgctctctaggagtcatcactaagaaaaaattatataaaagat 35244170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 84 - 164
Target Start/End: Original strand, 3010 - 3094
Alignment:
Q  84 attactaagaaacaattgtataaaaga----taatgaaataatgcataggtgtagcttatttatagtgacttggagtaactaact 164  Q
    ||||| |||||||||||||||||||||    || ||||||| | ||| |||||||| ||||||||||||||||||||||||||||    
T  3010 attaccaagaaacaattgtataaaagaaagatagtgaaatagtacatcggtgtagcatatttatagtgacttggagtaactaact 3094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University