View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21317_low_10 (Length: 284)
Name: NF21317_low_10
Description: NF21317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21317_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 21 - 271
Target Start/End: Original strand, 14880137 - 14880387
Alignment:
| Q |
21 |
atattcataaacctccatattcaagtagtattggaatgacatataaattgaaatactacaataactaaataaaatcaagaacagaaacattaaacaaaag |
120 |
Q |
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| T |
14880137 |
atattcataaagctccatattcaagtagtattggaatgacatataaattgaaatactacaataactaaataaaatcaagaacagaaacattaaacaaaag |
14880236 |
T |
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| Q |
121 |
ccagtaaaaatcaatgttatttaaagccactttttcatcaatccaaaggagaaataatttcagttgtacgaatccatcttcatcttgtcaaactccactt |
220 |
Q |
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| T |
14880237 |
ccagtaaaaatcaatgttatttaaagccactttctcatcaatccaaaggagaaataatttcagttgtacgaatccatcttcatcttgtcaaactccactt |
14880336 |
T |
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| Q |
221 |
ttttgttcttggatacatgtagaagaagatcacatacttgccttgatgatg |
271 |
Q |
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| T |
14880337 |
ttttgttctaggatacatgtagaagaagatcacatacttgccttgatgatg |
14880387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 14880112 - 14880084
Alignment:
| Q |
1 |
ttccattctgttttcacctaatattcata |
29 |
Q |
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| T |
14880112 |
ttccattctgttttcacctaatattcata |
14880084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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