View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21317_low_3 (Length: 433)
Name: NF21317_low_3
Description: NF21317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21317_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 88 - 421
Target Start/End: Complemental strand, 33866084 - 33865751
Alignment:
| Q |
88 |
agtatgctttccttcttcaggttcaccaagagaaaaaataaatattcttacttccatctctggtatcagaagcaccaactctcttgacaaatatctgagc |
187 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| || |
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| T |
33866084 |
agtatgctttccttcttcaggtacaccaagagaaaaaataaatattcttacttccatctctggtgtcaaaagcaccaactctcttgacaaatatctaggc |
33865985 |
T |
|
| Q |
188 |
ttttctattcttaaaggaagagctaaacgtagtgattttcagtttattattgaaaaaatgcaatccaggcttgcttcttggaaacataagttgttaaata |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33865984 |
ttttctattcttaaaggaagagctaaacgtagtgattttcagtttattattgaaaaaatgcaatccaggcttgcttcttggaaacataagttgttaaata |
33865885 |
T |
|
| Q |
288 |
aaccaagcagggtgactctagcatcttctctactttcctccacctgcaatttcatttagagggataataataacaaaggtattcatcttgttggatggnn |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33865884 |
aaccaagcagggtgactctagcatcttctctactttcctccacccgcaatttcatttagagggataataataacaaaggtattcatcttgttggatggga |
33865785 |
T |
|
| Q |
388 |
nnnnntatctcagcctaaacagcttggcgacctt |
421 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
33865784 |
aaaaatatctcagcctaaacagcttggcgacctt |
33865751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 33869563 - 33869488
Alignment:
| Q |
18 |
ccaataaccacaaccatatacttcttttgaaaacaataaaaacaattaactacttatttctctaattggaagtatg |
93 |
Q |
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| T |
33869563 |
ccaataaccacaaccatatacttcttttgaaaacaataaaaacaattaactacttatttctctaattggaagtatg |
33869488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 121 - 329
Target Start/End: Complemental strand, 18092049 - 18091840
Alignment:
| Q |
121 |
aaaaataaatattcttacttccatctctggtatcagaagcaccaactctcttgacaaatatctgagcttttctattcttaaaggaagagctaaacgtagt |
220 |
Q |
| |
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|||||| |||| ||| |||||||| | |||||| | ||||| | ||||||||||||||||||| ||||| |||||| || ||||| |||||||| ||| |
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| T |
18092049 |
aaaaattaatagtctcacttccatttatggtattaaaagcatcgactctcttgacaaatatcttggctttcttattctcaagggaagggctaaacgaagt |
18091950 |
T |
|
| Q |
221 |
gattttcagtttattatt-gaaaaaatgcaatccaggcttgcttcttggaaacataagttgttaaataaaccaagcagggtgactctagcatcttctcta |
319 |
Q |
| |
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|||| || ||||||||| |||||| |||| || || |||| |||||| |||||| || ||||||| || | || |||||||| ||||||||| | |
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| T |
18091949 |
tatttccattttattattaaaaaaaaaacaatgcatactggctttttggaagcataagatgctaaataagacaggaagagtgactcttgcatcttctgtt |
18091850 |
T |
|
| Q |
320 |
ctttcctcca |
329 |
Q |
| |
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|| ||||||| |
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| T |
18091849 |
ctctcctcca |
18091840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 149 - 271
Target Start/End: Complemental strand, 12645712 - 12645590
Alignment:
| Q |
149 |
ggtatcagaagcaccaactctcttgacaaatatctgagcttttctattcttaaaggaagagctaaacgtagtgattttcagtttattattgaaaaaatgc |
248 |
Q |
| |
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||||| |||||||| | |||||| || |||||| || ||||| |||| |||||| | ||||| ||| | |||||||| | ||||| ||||| ||||||| |
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| T |
12645712 |
ggtattagaagcacgacctctctggataaatatttgggctttcctatccttaaatggagagcaaaaagaagtgatttcctttttatcattgacaaaatgc |
12645613 |
T |
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| Q |
249 |
aatccaggcttgcttcttggaaa |
271 |
Q |
| |
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|||| || ||||||||||||||| |
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| T |
12645612 |
aatcaagtcttgcttcttggaaa |
12645590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 121 - 329
Target Start/End: Complemental strand, 32874219 - 32874012
Alignment:
| Q |
121 |
aaaaataaatattcttacttccatctctggtatcagaagcaccaactctcttgacaaatatctgagcttttctattcttaaaggaagagctaaacgtagt |
220 |
Q |
| |
|
|||||| |||| |||||||||||| |||| ||||||||||| | |||| ||||||||||| || |||| ||||||| |||||||| ||||| |||||| |
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| T |
32874219 |
aaaaattaatagacttacttccatcactggcatcagaagcactacctcttttgacaaatatgtg-gcttccctattctaaaaggaagggctaagcgtagt |
32874121 |
T |
|
| Q |
221 |
gattttcagtttattattgaaaaaatgcaatccaggcttgcttcttggaaacataagttgttaaataaaccaagcagggtgactctagcatcttctctac |
320 |
Q |
| |
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|| |||| ||||| ||||| ||||||||||||| ||||||||||| ||||||| |||||| ||||||||| | || |||||||||||||| | | | | |
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| T |
32874120 |
gactttctttttatcattgagaaaatgcaatccatacttgcttcttgaaaacataggttgttgaataaaccaggtagagtgactctagcatcatatgttc |
32874021 |
T |
|
| Q |
321 |
tttcctcca |
329 |
Q |
| |
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||||||||| |
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| T |
32874020 |
tttcctcca |
32874012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 133 - 329
Target Start/End: Original strand, 27153644 - 27153840
Alignment:
| Q |
133 |
tcttacttccatctctggtatcagaagcaccaactctcttgacaaatatctgagcttttctattcttaaaggaagagctaaacgtagtgattttcagttt |
232 |
Q |
| |
|
|||||||||||||| |||||| |||||||| ||||| || |||||| || |||| | ||||| || || |||||||| || | ||| || || ||| |
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| T |
27153644 |
tcttacttccatctatggtattagaagcacatcatctctggataaatatttggcctttcccattctaaaggggagagctaagcgcaatgacttccatttt |
27153743 |
T |
|
| Q |
233 |
attattgaaaaaatgcaatccaggcttgcttcttggaaacataagttgttaaataaaccaagcagggtgactctagcatcttctctactttcctcca |
329 |
Q |
| |
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|||||||||||| |||||||||| | ||| |||||||| || | |||||||||||||||| | || ||||||| ||||||||| | |||||||||| |
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| T |
27153744 |
attattgaaaaattgcaatccagacctgcctcttggaagcacaggttgttaaataaaccaggaagtatgactcttgcatcttctgttctttcctcca |
27153840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 140 - 291
Target Start/End: Complemental strand, 27781373 - 27781222
Alignment:
| Q |
140 |
tccatctctggtatcagaagcaccaactctcttgacaaatatctgagcttttctattcttaaaggaagagctaaacgtagtgattttcagtttattattg |
239 |
Q |
| |
|
||||||| ||||||| ||||||||| ||||||||||||||| || | ||| | || || ||||| || ||||||| ||||| ||||| ||| |||||| |
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|
| T |
27781373 |
tccatctttggtatctgaagcaccacatctcttgacaaatatttgggttttccaatactcaaaggccgacctaaacgaagtgactttcattttgttattg |
27781274 |
T |
|
| Q |
240 |
aaaaaatgcaatccaggcttgcttcttggaaacataagttgttaaataaacc |
291 |
Q |
| |
|
| |||||||| | | ||||||| |||||| | || |||||||||||||| |
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|
| T |
27781273 |
acaaaatgcatactcgtcttgcttattggaagaacaaattgttaaataaacc |
27781222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 101
Target Start/End: Complemental strand, 42446653 - 42446574
Alignment:
| Q |
23 |
aaccacaaccatatacttcttt-tgaaaacaataaaaacaattaactacttatttctctaattggaagtatgctttcctt |
101 |
Q |
| |
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|||||||| ||||||| |||| ||||||||| |||||||||||| || ||||| ||| ||||||||| ||| ||||||| |
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| T |
42446653 |
aaccacaatcatatacctcttggtgaaaacaagaaaaacaattaattaattattcctccaattggaagaatgttttcctt |
42446574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 375
Target Start/End: Complemental strand, 24181386 - 24181340
Alignment:
| Q |
329 |
acctgcaatttcatttagagggataataataacaaaggtattcatct |
375 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||| || ||||||| |
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|
| T |
24181386 |
acctgcaatttcatttggagagataataataacaaatgtgttcatct |
24181340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 134 - 291
Target Start/End: Complemental strand, 24132991 - 24132834
Alignment:
| Q |
134 |
cttacttccatctctggtatcagaagcaccaactctcttgacaaatatctgagcttttctattcttaaaggaagagctaaacgtagtgattttcagttta |
233 |
Q |
| |
|
|||||||| || ||||| || ||||| |||| |||||||| |||||| | | ||| | || |||||||||||||| || | |||||||| | |||| |
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| T |
24132991 |
cttacttctatttctggcataagaagtaccacatctcttgataaatatattggttttcccatccttaaaggaagagcaaagagaagtgatttgcttttta |
24132892 |
T |
|
| Q |
234 |
ttattgaaaaaatgcaatccaggcttgcttcttggaaacataagttgttaaataaacc |
291 |
Q |
| |
|
||||||||||||||||| | ||| | || ||||||||| | | ||||||||| ||||| |
|
|
| T |
24132891 |
ttattgaaaaaatgcaaacaaggttagcatcttggaaaaacaggttgttaaacaaacc |
24132834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 277
Target Start/End: Complemental strand, 46784137 - 46784078
Alignment:
| Q |
218 |
agtgattttcagtttattattgaaaaaatgcaatccaggcttgcttcttggaaacataag |
277 |
Q |
| |
|
||||||||| | ||||||||||| ||||||||| | || ||||||||||||||| ||||| |
|
|
| T |
46784137 |
agtgattttaattttattattgagaaaatgcaaacgagacttgcttcttggaaatataag |
46784078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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