View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21317_low_4 (Length: 354)
Name: NF21317_low_4
Description: NF21317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21317_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 16 - 337
Target Start/End: Complemental strand, 5280354 - 5280033
Alignment:
| Q |
16 |
atagaacgcaagaaacaagactgagcaagcaagaggaattgatggggtattgtgctgaaaattaagaattgtaacatgagtattgatggaagatgcaaaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5280354 |
atagaacgcaagaaacaagactgagcaagcaagaggaattgatggggtattgtgctgaaaattaagaattgtaacatgagtattgatggaagatgcaaaa |
5280255 |
T |
|
| Q |
116 |
gataaaatctaaacaataaaagataattatttaccattccattccatctcacttcattacattcgatcaatccaaacataatataaaatctaagtataca |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5280254 |
gataaaatctaaacaataaaagataattatttaccattccattccatctcacttcattacattcgatcaatccaaacataatataaaatctaagtataca |
5280155 |
T |
|
| Q |
216 |
aaagagagtgcaataataattaagtctctagaactaagacaaagtctaaactgatcttattttgatttagcttagagcttttccaatataaaataacaat |
315 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5280154 |
aaagagagtgcaattataattaagtctctagaactaagacaaagtctaaactgatcttattttgatttagcttagagcttttccaatataaaataacaat |
5280055 |
T |
|
| Q |
316 |
tacaaggagaacagttcctaaa |
337 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
5280054 |
tacaaggagaacagttcctaaa |
5280033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 214 - 286
Target Start/End: Original strand, 5281012 - 5281084
Alignment:
| Q |
214 |
caaaagagagtgcaataataattaagtctctagaactaagacaaagtctaaactgatcttattttgatttagc |
286 |
Q |
| |
|
|||||||||||||| | |||||| |||||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5281012 |
caaaagagagtgcagttataattgagtctccagaactaagacaaagtctaaactgatcttatgttgatttagc |
5281084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 214 - 267
Target Start/End: Complemental strand, 5288037 - 5287984
Alignment:
| Q |
214 |
caaaagagagtgcaataataattaagtctctagaactaagacaaagtctaaact |
267 |
Q |
| |
|
|||||||||||||||| ||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
5288037 |
caaaagagagtgcaattataattaagtctcaacaactaagacaaagtctaaact |
5287984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 206 - 286
Target Start/End: Original strand, 20352181 - 20352261
Alignment:
| Q |
206 |
taagtatacaaaagagagtgcaataataattaagtctctagaactaagacaaagtctaaactgatcttattttgatttagc |
286 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
20352181 |
taagtttacaaaagagagtgcaattataattaagtctcaacaactaagacaaagtctaaactgatcttatgttgatttagc |
20352261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 7510084 - 7510141
Alignment:
| Q |
138 |
ataattatttaccattccattccatctcacttcattacattcgatcaatccaaacata |
195 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||| | |||| ||||||||||||||| |
|
|
| T |
7510084 |
ataattagttaccattccattccatcccacttcatcagattccatcaatccaaacata |
7510141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 265
Target Start/End: Complemental strand, 20359426 - 20359373
Alignment:
| Q |
214 |
caaaagagagtgcaataataattaagtctc--tagaactaagacaaagtctaaa |
265 |
Q |
| |
|
|||||||||||||||| ||||||||||||| | ||||||||||||||||||| |
|
|
| T |
20359426 |
caaaagagagtgcaattataattaagtctcaaaacaactaagacaaagtctaaa |
20359373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 214 - 321
Target Start/End: Complemental strand, 6237051 - 6236944
Alignment:
| Q |
214 |
caaaagagagtgcaataataattaagtctctagaactaagacaaagtctaaactgatcttattttgatttagcttagagcttttccaatataaaataaca |
313 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||| |||| |||||||||||||||| ||||||||||||| ||| |||| ||| |||||||| ||| |
|
|
| T |
6237051 |
caaaagagagtgcaattataattaagtctccagaaccaagaaaaagtctaaactgatcatattttgatttagacaagatctttgccattataaaattaca |
6236952 |
T |
|
| Q |
314 |
attacaag |
321 |
Q |
| |
|
|||||||| |
|
|
| T |
6236951 |
attacaag |
6236944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 195
Target Start/End: Original strand, 24020639 - 24020693
Alignment:
| Q |
141 |
attatttaccattccattccatctcacttcattacattcgatcaatccaaacata |
195 |
Q |
| |
|
|||||||||||||||||| |||| ||| ||| |||||| ||||||||||||||| |
|
|
| T |
24020639 |
attatttaccattccattacatccaactccatcacattccatcaatccaaacata |
24020693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 204
Target Start/End: Complemental strand, 13476829 - 13476745
Alignment:
| Q |
120 |
aaatctaaacaataaaagataattatttaccattccattccatctcacttcattacattcgatcaatccaaacataatataaaat |
204 |
Q |
| |
|
||||| ||||||| ||| ||||||| |||| | | |||||||||||||| ||||||||| |||||| ||||||| | |||||| |
|
|
| T |
13476829 |
aaatccaaacaatgaaacataattaattactacttcattccatctcactgcattacatttcgtcaatctaaacatagtctaaaat |
13476745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University