View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21317_low_5 (Length: 349)
Name: NF21317_low_5
Description: NF21317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21317_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 160 - 336
Target Start/End: Original strand, 14880211 - 14880387
Alignment:
| Q |
160 |
tcaagaacagaaacattaaacaaaagccagtaaaaatcaatgttatttaaagccactttttcatcaatccaaaggagaaataatttcagttgtacgaatc |
259 |
Q |
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| T |
14880211 |
tcaagaacagaaacattaaacaaaagccagtaaaaatcaatgttatttaaagccactttctcatcaatccaaaggagaaataatttcagttgtacgaatc |
14880310 |
T |
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| Q |
260 |
catcttcatcttgtcaaactccacttttttgttcttggatacatgtagaagaagatcacatacttgccttgatgatg |
336 |
Q |
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| T |
14880311 |
catcttcatcttgtcaaactccacttttttgttctaggatacatgtagaagaagatcacatacttgccttgatgatg |
14880387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 50 - 152
Target Start/End: Complemental strand, 14880092 - 14879990
Alignment:
| Q |
50 |
atattcatattgttgattagtatatctattcatatagttccaagcaaaaaccttttacatgcattggaaaatttatgtgtatgcttaattggtatgtatg |
149 |
Q |
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| T |
14880092 |
atattcatattgttgattagtatatctattcatatagttccaagcaaaaaccttttacatccattgtaaaatttatgtgtatgcttaattggtatgtatg |
14879993 |
T |
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| Q |
150 |
tct |
152 |
Q |
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||| |
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| T |
14879992 |
tct |
14879990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 14880088 - 14880145
Alignment:
| Q |
1 |
aatattaggtgaaaacagaatggaaaatatgcaatatcatataacctttatattcata |
58 |
Q |
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| T |
14880088 |
aatattaggtgaaaacagaatggaaaatatgcaatatcatataacctttatattcata |
14880145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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