View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21317_low_6 (Length: 320)
Name: NF21317_low_6
Description: NF21317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21317_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 17 - 302
Target Start/End: Original strand, 37006412 - 37006697
Alignment:
| Q |
17 |
atgaaatgtgaatgaagtcaaaagttgaaataattgttgaataaaagaccttccttatacttgaacatgatgcctttcattgttctttcaagattgaaga |
116 |
Q |
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| T |
37006412 |
atgaaatgtgaatgaagtcaaaagttgaaataattgttgaataaaagaccttccttatacttgaacatgatgcctttcattgttctttcaagattgaaga |
37006511 |
T |
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| Q |
117 |
acttttacaatgaaaaaacataaatgaatataggaccattcaattagcaatggtggtaccacataaatgaacaaatagtaaagctagcaccattgatttg |
216 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37006512 |
acttttacaatgaaaaaacataaatgaatttaggaccattcaattagcaatggtggtaccacataaatgaacaaatagtaaagctagcaccattgatttg |
37006611 |
T |
|
| Q |
217 |
catattgtagacaagggtatcccatattttcctttcccaaacaatcctttcaaaaatggcaagtagcataaaatcacatatgcact |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37006612 |
catattgtagacaagggtatcccatattttcctttcccaaacaatcctttcaaaaatggcaagtagcataaaaccacatatgcact |
37006697 |
T |
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