View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21317_low_7 (Length: 320)
Name: NF21317_low_7
Description: NF21317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21317_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 131 - 307
Target Start/End: Original strand, 14880211 - 14880387
Alignment:
| Q |
131 |
tcaagaacagaaacattaaacaaaagccagtaaaaatcaatgttatttaaagccactttttcatcaatccaaaggagaaataatttcagttgtacgaatc |
230 |
Q |
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| T |
14880211 |
tcaagaacagaaacattaaacaaaagccagtaaaaatcaatgttatttaaagccactttctcatcaatccaaaggagaaataatttcagttgtacgaatc |
14880310 |
T |
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| Q |
231 |
catcttcatcttgtcaaactccacttttttgttcttggatacatgtagaagaagatcacatacttgccttgatgatg |
307 |
Q |
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| T |
14880311 |
catcttcatcttgtcaaactccacttttttgttctaggatacatgtagaagaagatcacatacttgccttgatgatg |
14880387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 14880112 - 14879990
Alignment:
| Q |
1 |
ttccattctgttttcacctaatattcatattgttgattagtatatctattcatatagttccaagcaaaaaccttttacatgcattggaaaatttatgtgt |
100 |
Q |
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| T |
14880112 |
ttccattctgttttcacctaatattcatattgttgattagtatatctattcatatagttccaagcaaaaaccttttacatccattgtaaaatttatgtgt |
14880013 |
T |
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| Q |
101 |
atgcttaattggtatgtatgtct |
123 |
Q |
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| T |
14880012 |
atgcttaattggtatgtatgtct |
14879990 |
T |
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