View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21317_low_9 (Length: 310)
Name: NF21317_low_9
Description: NF21317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21317_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 23 - 294
Target Start/End: Original strand, 37147717 - 37147987
Alignment:
| Q |
23 |
gctgcacttctagcccgcaaagcctggtgagcctagccacatgaaccaccacttttttgtttcaagtgtcactaatatagtgcatagttctcttaccctg |
122 |
Q |
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| T |
37147717 |
gctgcactgctagcccacaaagcctggtgagcctagctacatgaaccaccactttt-tgtttcaagcgtcactaatatagtgcatagttctcttatcctg |
37147815 |
T |
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| Q |
123 |
caagcttctggtttttcagtcaggtcttttttgttgtttgataacacgcgcgagatagagaagactatcatccatacaagctgcaagcagggtatataat |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37147816 |
caagcttctggtttttcagtcaggtcttttttgttgtttgataacacacgcgagatagagaagactatcatccatacaagctgcaagcagggtatataat |
37147915 |
T |
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| Q |
223 |
aagagttgcatcaattaatatttagtcactccttttcaccttccctctatttatatccctccttatcttcat |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37147916 |
aagagttgcatcaattaatatttagtcactccttttcaccttccctctatttatatccctccttattttcat |
37147987 |
T |
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Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 46621421 - 46621349
Alignment:
| Q |
23 |
gctgcacttctagcccgcaaagcctggtgagcctagccacatgaaccaccacttttttgtttcaagtgtcact |
95 |
Q |
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||||||||||||| || | ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
46621421 |
gctgcacttctagtccaatatgcctggtgagcctagccacctgaaccaccacttttttgtttcaagtgtcact |
46621349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 46627143 - 46627070
Alignment:
| Q |
23 |
gctgcacttctagcccgcaaagcctggtgagcctagccacatgaaccaccac-ttttttgtttcaagtgtcact |
95 |
Q |
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|||||||||||||||| | ||||||||||||||||||| |||||||| || ||||||||||||||| ||||| |
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| T |
46627143 |
gctgcacttctagcccaatatgcctggtgagcctagccacttgaaccacaactttttttgtttcaagtatcact |
46627070 |
T |
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