View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21318_high_2 (Length: 444)

Name: NF21318_high_2
Description: NF21318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21318_high_2
NF21318_high_2
[»] chr4 (4 HSPs)
chr4 (85-436)||(54058610-54058961)
chr4 (153-212)||(54460006-54460065)
chr4 (33-86)||(54058906-54058959)
chr4 (135-191)||(54459913-54459969)
[»] chr3 (10 HSPs)
chr3 (2-212)||(15038003-15038216)
chr3 (2-212)||(15038225-15038438)
chr3 (1-129)||(15037948-15038076)
chr3 (33-139)||(15037926-15038032)
chr3 (28-139)||(15038197-15038308)
chr3 (79-211)||(15038416-15038551)
chr3 (2-139)||(15038111-15038254)
chr3 (33-112)||(15038424-15038503)
chr3 (84-139)||(15037923-15037978)
chr3 (2-60)||(15038447-15038505)


Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 85 - 436
Target Start/End: Complemental strand, 54058961 - 54058610
Alignment:
Q  85 tcctcatttttagattctgttactcttttatcaaccatcatttccccgagcttctcgttgttggattctgttatacttacaccattctccgccaccatct 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  54058961 tcctcatttttagattctgttactcttttatcaaccatcatttcctcgagcttctcgttgttggattctgttacacttacaccattctccgccatcatct 54058862  T
Q  185 ccacaagttgctcctcatttttagattcaacgacacttttatcaaccattgtgtcaataagcttctcctcagttttagattctgttacatttaaaccatt 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  54058861 ccacaagttgctcctcatttttagattcaacgacacttttatcaatcattgtgtcaataagtttctcctcagttttagattctgttacatttaaaccatt 54058762  T
Q  285 accagccatagtctccacatgctgctcctcagtttttgattctgcattaactccattctcatcaacccttgatattgttgtattaacaactgcatcagta 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54058761 accagccatagtctccacatgctgctcctcagtttttgattctgcatcaactccattctcatcaacccttgatattgttgtattaacaactgcatcagta 54058662  T
Q  385 gcatttttcacagttttttcacttttctgtcttgcttctctagccctatgct 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  54058661 gcatttttcacagttttttcacttttctgtcttgcttctctagccttatgct 54058610  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 54460065 - 54460006
Alignment:
Q  153 tgttatacttacaccattctccgccaccatctccacaagttgctcctcatttttagattc 212  Q
    |||||||||||||||||| || || |||||||| ||||| ||||||||| ||||||||||    
T  54460065 tgttatacttacaccattatcagcaaccatctcaacaagctgctcctcaattttagattc 54460006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 54058959 - 54058906
Alignment:
Q  33 ctcatttttggattctgttactctttcatcaacggtcatttcctcgagtttctc 86  Q
    ||||||||| |||||||||||||||| ||||||  ||||||||||||| |||||    
T  54058959 ctcatttttagattctgttactcttttatcaaccatcatttcctcgagcttctc 54058906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 191
Target Start/End: Complemental strand, 54459969 - 54459913
Alignment:
Q  135 cttctcgttgttggattctgttatacttacaccattctccgccaccatctccacaag 191  Q
    |||||| || ||||||  |||||||||||||||||| || |||| ||||||||||||    
T  54459969 cttctcatttttggatgttgttatacttacaccattatcagccatcatctccacaag 54459913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 124; Significance: 1e-63; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 2 - 212
Target Start/End: Original strand, 15038003 - 15038216
Alignment:
Q  2 tttcatcaaccgccatttcctcgagcttcttctcatttttggattctgttactctttcatcaacggtcatttcctcgagtttctcctcatttttagattc 101  Q
    |||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  15038003 tttcatcaaccgtcatttcctcgagcttcttctcatctttagattctgttactctttcatcaaccgtcatttccttgagtttctcctcatttttagattc 15038102  T
Q  102 tgttactcttttatcaaccatcatttccccgagcttct---cgttgttggattctgttatacttacaccattctccgccaccatctccacaagttgctcc 198  Q
    ||||||||||| ||||||| |||||||| |||||||||   | |  ||||||||||||| |||||||||||| |||  |||| |||||| ||||| ||||    
T  15038103 tgttactctttcatcaaccgtcatttcctcgagcttcttctcatctttggattctgttacacttacaccattatccaacaccgtctccaaaagtttctcc 15038202  T
Q  199 tcatttttagattc 212  Q
    ||| ||||||||||    
T  15038203 tcaattttagattc 15038216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 2 - 212
Target Start/End: Original strand, 15038225 - 15038438
Alignment:
Q  2 tttcatcaaccgccatttcctcgagcttcttctcatttttggattctgttactctttcatcaacggtcatttcctcgagtttctcctcatttttagattc 101  Q
    |||||||||||  ||||||||||||||||||||||||||| ||||||||||| ||| ||||||| |||||||||||||| |||| |||||||||||||||    
T  15038225 tttcatcaaccatcatttcctcgagcttcttctcatttttagattctgttacacttacatcaactgtcatttcctcgagcttcttctcatttttagattc 15038324  T
Q  102 tgttactcttttatcaaccatcatttccccgag---cttctcgttgttggattctgttatacttacaccattctccgccaccatctccacaagttgctcc 198  Q
    ||||||| ||| ||||||| |||||||| ||||   |||||| || || |||||||||| |||||||||||| |||  |||| |||||| ||||||||||    
T  15038325 tgttactgtttcatcaaccgtcatttcctcgagcttcttctcatttttagattctgttaaacttacaccattatccaacaccgtctccaaaagttgctcc 15038424  T
Q  199 tcatttttagattc 212  Q
    |||| |||||||||    
T  15038425 tcatatttagattc 15038438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 15037948 - 15038076
Alignment:
Q  1 ttttcatcaaccgccatttcctcgagcttcttctcatttttggattctgttactctttcatcaacggtcatttcctcgagtttctcctcatttttagatt 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||| ||||||||    
T  15037948 ttttcatcaaccgtcatttcctcgagcttcttctcatttttggattctgttactctttcatcaaccgtcatttcctcgagcttcttctcatctttagatt 15038047  T
Q  101 ctgttactcttttatcaaccatcatttcc 129  Q
    |||||||||||| ||||||| ||||||||    
T  15038048 ctgttactctttcatcaaccgtcatttcc 15038076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 15037926 - 15038032
Alignment:
Q  33 ctcatttttggattctgttactctttcatcaacggtcatttcctcgagtttctcctcatttttagattctgttactcttttatcaaccatcatttccccg 132  Q
    ||||||||| |||||||||||| |||||||||| |||||||||||||| |||| ||||||||| |||||||||||||||| ||||||| |||||||| ||    
T  15037926 ctcatttttagattctgttactttttcatcaaccgtcatttcctcgagcttcttctcatttttggattctgttactctttcatcaaccgtcatttcctcg 15038025  T
Q  133 agcttct 139  Q
    |||||||    
T  15038026 agcttct 15038032  T

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Target: chr3; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 28 - 139
Target Start/End: Original strand, 15038197 - 15038308
Alignment:
Q  28 ttcttctcatttttggattctgttactctttcatcaacggtcatttcctcgagtttctcctcatttttagattctgttactcttttatcaaccatcattt 127  Q
    |||| |||| |||| |||||||||||| ||||||||||  ||||||||||||| |||| ||||||||||||||||||||| |||  ||||||  ||||||    
T  15038197 ttctcctcaattttagattctgttactgtttcatcaaccatcatttcctcgagcttcttctcatttttagattctgttacacttacatcaactgtcattt 15038296  T
Q  128 ccccgagcttct 139  Q
    || |||||||||    
T  15038297 cctcgagcttct 15038308  T

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Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 79 - 211
Target Start/End: Original strand, 15038416 - 15038551
Alignment:
Q  79 agtttctcctcatttttagattctgttactcttttatcaaccatcatttccccgag---cttctcgttgttggattctgttatacttacaccattctccg 175  Q
    |||| |||||||| |||||||||||||||||||| ||||||| |||||||| ||||   |||||| || || ||||||| || |||| ||||||| |||     
T  15038416 agttgctcctcatatttagattctgttactctttcatcaaccgtcatttcctcgagctccttctcatttttagattctgctacactttcaccattatcca 15038515  T
Q  176 ccaccatctccacaagttgctcctcatttttagatt 211  Q
    |||   |||||| |||||||||||||||||| ||||    
T  15038516 ccattgtctccaaaagttgctcctcattttttgatt 15038551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 2 - 139
Target Start/End: Original strand, 15038111 - 15038254
Alignment:
Q  2 tttcatcaaccgccatttcctcgagcttcttctcatttttggattctgttactctttcatcaacggtca------tttcctcgagtttctcctcattttt 95  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||| || ||     ||      | |||   |||||||||||| ||||    
T  15038111 tttcatcaaccgtcatttcctcgagcttcttctcatctttggattctgttacacttacaccattatccaacaccgtctccaaaagtttctcctcaatttt 15038210  T
Q  96 agattctgttactcttttatcaaccatcatttccccgagcttct 139  Q
    ||||||||||||| ||| |||||||||||||||| |||||||||    
T  15038211 agattctgttactgtttcatcaaccatcatttcctcgagcttct 15038254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 15038424 - 15038503
Alignment:
Q  33 ctcatttttggattctgttactctttcatcaacggtcatttcctcgagtttctcctcatttttagattctgttactcttt 112  Q
    ||||| ||| ||||||||||||||||||||||| |||||||||||||| | || ||||||||||||||||| ||| ||||    
T  15038424 ctcatatttagattctgttactctttcatcaaccgtcatttcctcgagctccttctcatttttagattctgctacacttt 15038503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 84 - 139
Target Start/End: Original strand, 15037923 - 15037978
Alignment:
Q  84 ctcctcatttttagattctgttactcttttatcaaccatcatttccccgagcttct 139  Q
    ||||||||||||||||||||||||| ||| ||||||| |||||||| |||||||||    
T  15037923 ctcctcatttttagattctgttactttttcatcaaccgtcatttcctcgagcttct 15037978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 15038447 - 15038505
Alignment:
Q  2 tttcatcaaccgccatttcctcgagcttcttctcatttttggattctgttactctttca 60  Q
    |||||||||||| |||||||||||||| |||||||||||| ||||||| ||| ||||||    
T  15038447 tttcatcaaccgtcatttcctcgagctccttctcatttttagattctgctacactttca 15038505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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