View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21318_high_3 (Length: 427)
Name: NF21318_high_3
Description: NF21318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21318_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 420
Target Start/End: Complemental strand, 11471545 - 11471129
Alignment:
| Q |
1 |
aattcatttctcaagttcagtatttcacaaaatccaattcagaaaaatgctttaatgtaaaatggattcggttagaacattgatatagtacaaatgtaaa |
100 |
Q |
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| T |
11471545 |
aattcatttctcaagttcagtatttcacaaaatccaattcagaaaaatgctttcatgtaaaatggattcggttagaacattgatatagtacaaatgtaaa |
11471446 |
T |
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| Q |
101 |
atttaaaggatccggagaggtaattgtcctaatagaaa-ttatagaaggaaaatatgtaacatgtaactaannnnnnnnnnnnnnn-atcaacaattgga |
198 |
Q |
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| T |
11471445 |
atttaaaagaccccgggatgtatttggcctaaaaaaaaattaaagaagtaaaatatgtaacatgtaactaattttttatatttttttatcaacaattgga |
11471346 |
T |
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| Q |
199 |
atgttatttttcactcaaaatcaaacttcattttgaaggatgttaataatggtgttatagtgcaccgaactatataccatttgacgtaaaagagaaaaat |
298 |
Q |
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| T |
11471345 |
atgttatttttcac-caaaatcaaacttcgttttgaaggatg---ataatggtgttatagtgcaccgaactatataccatttgacttaaa-gagaaaaat |
11471251 |
T |
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| Q |
299 |
tatctcttataattataagacgaaattgatgaacaaactaaaacaaatcatgttagctttgatggacaaaactgagaagagataaatattcatgtttgtg |
398 |
Q |
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| T |
11471250 |
tatctcttataataataagacgaaattgatgaacaaactaaaacaaatcatgttagttttgatggacaaaactgagaagagataaatattcatgtttgtg |
11471151 |
T |
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| Q |
399 |
ctaactatgatgatgatgatgt |
420 |
Q |
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| T |
11471150 |
ctaactatgatgatgatgatgt |
11471129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 11477978 - 11477937
Alignment:
| Q |
199 |
atgttatttttcactcaaaatcaaacttcattttgaaggatg |
240 |
Q |
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| T |
11477978 |
atgttatttttcactcaaaatcaaacttcattttgaaggatg |
11477937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 418
Target Start/End: Complemental strand, 11484319 - 11484209
Alignment:
| Q |
308 |
taattataagacgaaattgatgaacaaactaaaacaaatcatgttagctttgatggacaaaactgagaagagataaatattcatgtttgtgctaactatg |
407 |
Q |
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|||| ||||||| ||||||||||| ||| || |||||||||||| ||||||| ||||||| |||| |||| ||||| |||||| ||| ||| ||| |
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| T |
11484319 |
taataataagacaaaattgatgaagaaatataagcaaatcatgttatctttgataagcaaaactcagaaaagatggatatttatgtttatgccaacaatg |
11484220 |
T |
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| Q |
408 |
atgatgatgat |
418 |
Q |
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| T |
11484219 |
atgatgatgat |
11484209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 11484600 - 11484552
Alignment:
| Q |
192 |
aattggaatgttatttttcactcaaaatcaaacttcattttgaaggatg |
240 |
Q |
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| T |
11484600 |
aattcgaatgtcatttttcacgaaaaatcaaacttcattttgaaggatg |
11484552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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