View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21318_high_4 (Length: 374)
Name: NF21318_high_4
Description: NF21318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21318_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 19 - 357
Target Start/End: Original strand, 46326434 - 46326772
Alignment:
| Q |
19 |
gagatggaaagaatagaacatagaacagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46326434 |
gagatggaaagaatagaacatagaacagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacg |
46326533 |
T |
|
| Q |
119 |
gctttcctgaactctggtactcttggcgccaccagattgcggctctcggctccctcggctaccgcgccgtagctccggatctacgtggctatggtgacac |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || || ||||| ||||| ||||||||||||||||| |
|
|
| T |
46326534 |
gctttcctgaactctggtactcttggcgccaccagattgcggctctcggatccctcggttaccgtgctgttgctcccgatctccgtggctatggtgacac |
46326633 |
T |
|
| Q |
219 |
tgaggctccatcttcaataagcagctacacatgttttcacgtagttggtgacatcgtttctctcatcgacttgcttggtgtggaacaagttttccttgtt |
318 |
Q |
| |
|
|| | ||| ||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46326634 |
agatgttccgtcttccattagcagctacacatgttttcacgtagttggtgacattgtttctctcatcgacttgcttggtgtggaacaagttttccttgtt |
46326733 |
T |
|
| Q |
319 |
ggtcatgatatgggtgccatcattggttggtatctttgt |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46326734 |
ggtcatgatatgggtgccatcattggttggtatctttgt |
46326772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 356
Target Start/End: Original strand, 46322729 - 46323066
Alignment:
| Q |
19 |
gagatggaaagaatagaacatagaacagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacg |
118 |
Q |
| |
|
||||||||| ||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46322729 |
gagatggaaggaatagagcacagaagagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacg |
46322828 |
T |
|
| Q |
119 |
gctttcctgaactctggtactcttggcgccaccagattgcggctctcggctccctcggctaccgcgccgtagctccggatctacgtggctatggtgacac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46322829 |
gctttcctgaactctggtactcttggcgccaccagattgcggctctcggctctctcggctaccgcgccgtagctccggatctacgtggctatggtgacac |
46322928 |
T |
|
| Q |
219 |
tgaggctccatcttcaataagcagctacacatgttttcacgtagttggtgacatcgtttctctcatcgacttgcttggtgtggaacaagttttccttgtt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| | || ||||| | ||| | || || || |||||||| || || ||||| || ||||| |
|
|
| T |
46322929 |
tgaggctccatcttcaataagcagctacacaggttttcacattgtaggtgatctggttgcacttatagatttgcttggcgttgatcaagtgtttcttgta |
46323028 |
T |
|
| Q |
319 |
ggtcatgatatgggtgccatcattggttggtatctttg |
356 |
Q |
| |
|
| ||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
46323029 |
gctcatgattggggtgccatcattggttggtacctttg |
46323066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 19 - 357
Target Start/End: Complemental strand, 46532383 - 46532045
Alignment:
| Q |
19 |
gagatggaaagaatagaacatagaacagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacg |
118 |
Q |
| |
|
||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| | |
|
|
| T |
46532383 |
gagatggaaggaatagaacacagaacagtggaggtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcttgttccttcatg |
46532284 |
T |
|
| Q |
119 |
gctttcctgaactctggtactcttggcgccaccagattgcggctctcggctccctcggctaccgcgccgtagctccggatctacgtggctatggtgacac |
218 |
Q |
| |
|
|||| || ||||||||||| || ||||||||||| |||| ||||| ||||||||||| ||||||||||| ||||| ||||| ||||||||||||||||| |
|
|
| T |
46532283 |
gcttcccagaactctggtattcatggcgccaccaaattgtagctcttggctccctcggttaccgcgccgttgctccagatctgcgtggctatggtgacac |
46532184 |
T |
|
| Q |
219 |
tgaggctccatcttcaataagcagctacacatgttttcacgtagttggtgacatcgtttctctcatcgacttgcttggtgtggaacaagttttccttgtt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| | || |||||| | ||| | || || || ||||||||||| || ||||| || ||||| |
|
|
| T |
46532183 |
cgaggctccatcttcaataagcagctacactggttttcacattgtaggtgaccttgttgcacttatagatttgcttggtgttgaccaagtgtttcttgtg |
46532084 |
T |
|
| Q |
319 |
ggtcatgatatgggtgccatcattggttggtatctttgt |
357 |
Q |
| |
|
| ||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
46532083 |
gctcatgattggggtgctatcattggttggtatctttgt |
46532045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 20 - 357
Target Start/End: Complemental strand, 46524829 - 46524492
Alignment:
| Q |
20 |
agatggaaagaatagaacatagaacagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacgg |
119 |
Q |
| |
|
|||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
46524829 |
agatggaaggaatagaacacagaagagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgtcttgttccttcatgg |
46524730 |
T |
|
| Q |
120 |
ctttcctgaactctggtactcttggcgccaccagattgcggctctcggctccctcggctaccgcgccgtagctccggatctacgtggctatggtgacact |
219 |
Q |
| |
|
||| || ||||||||||| || |||||||||||||||| |||||| |||||||||||||||| || || ||||| ||||| ||||||||||||||||| |
|
|
| T |
46524729 |
cttcccagaactctggtattcatggcgccaccagattgtagctctcagctccctcggctaccgtgctgttgctcccgatctccgtggctatggtgacacc |
46524630 |
T |
|
| Q |
220 |
gaggctccatcttcaataagcagctacacatgttttcacgtagttggtgacatcgtttctctcatcgacttgcttggtgtggaacaagttttccttgttg |
319 |
Q |
| |
|
|| ||||| |||||| | || ||||||||| |||||||| |||| ||||| | ||| | || || || || || ||||| || ||||| || ||||||| |
|
|
| T |
46524629 |
gatgctccgtcttcagttagtagctacacaggttttcacatagtaggtgatcttgttgcacttatagattttctgggtgttgatcaagtgtttcttgttg |
46524530 |
T |
|
| Q |
320 |
gtcatgatatgggtgccatcattggttggtatctttgt |
357 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
46524529 |
ctcatgattggggtgctatcattggttggtatctttgt |
46524492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 19 - 357
Target Start/End: Complemental strand, 46479334 - 46478996
Alignment:
| Q |
19 |
gagatggaaagaatagaacatagaacagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacg |
118 |
Q |
| |
|
||||||||| |||||||||| ||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||| || ||||||||||||||||||| |
|
|
| T |
46479334 |
gagatggaaggaatagaacacagaacggtggaagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacg |
46479235 |
T |
|
| Q |
119 |
gctttcctgaactctggtactcttggcgccaccagattgcggctctcggctccctcggctaccgcgccgtagctccggatctacgtggctatggtgacac |
218 |
Q |
| |
|
|||| |||||||||||||| || ||||||||||||||||| ||||| ||||||||||| ||||| || || ||||| ||||| |||||||| || ||||| |
|
|
| T |
46479234 |
gcttccctgaactctggtattcatggcgccaccagattgctgctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacac |
46479135 |
T |
|
| Q |
219 |
tgaggctccatcttcaataagcagctacacatgttttcacgtagttggtgacatcgtttctctcatcgacttgcttggtgtggaacaagttttccttgtt |
318 |
Q |
| |
|
|| ||||| |||||||||||||||||||| || ||| | || ||||| |||||| |||||||||||| || || || || ||||| |||||||| |
|
|
| T |
46479134 |
cgatgctcccgcttcaataagcagctacacaatcttccacttggtgggtgatatcgttgctctcatcgactcactcggcgttgaccaagtgttccttgta |
46479035 |
T |
|
| Q |
319 |
ggtcatgatatgggtgccatcattggttggtatctttgt |
357 |
Q |
| |
|
| ||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
46479034 |
gctcatgattggggtgccatgattggttggtatctttgt |
46478996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 21 - 356
Target Start/End: Complemental strand, 46520762 - 46520427
Alignment:
| Q |
21 |
gatggaaagaatagaacatagaacagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacggc |
120 |
Q |
| |
|
||||||| |||||||||| ||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||| || ||||||||||||||||||||| |
|
|
| T |
46520762 |
gatggaaggaatagaacacagaacggtggaagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggc |
46520663 |
T |
|
| Q |
121 |
tttcctgaactctggtactcttggcgccaccagattgcggctctcggctccctcggctaccgcgccgtagctccggatctacgtggctatggtgacactg |
220 |
Q |
| |
|
|| |||||||||||||| || ||||||||||||||||| ||||| ||||||||||| ||||| || || ||||| ||||| |||||||| || ||||| | |
|
|
| T |
46520662 |
ttccctgaactctggtattcatggcgccaccagattgctgctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacaccg |
46520563 |
T |
|
| Q |
221 |
aggctccatcttcaataagcagctacacatgttttcacgtagttggtgacatcgtttctctcatcgacttgcttggtgtggaacaagttttccttgttgg |
320 |
Q |
| |
|
| ||||| |||||||||||||||||||| || ||| | || ||||| |||||| |||||||||||| || || || || ||||| |||||||| | |
|
|
| T |
46520562 |
atgctcccgcttcaataagcagctacacaatcttccacttggtgggtgatatcgttgctctcatcgactcactcggcgttgaccaagtgttccttgtagc |
46520463 |
T |
|
| Q |
321 |
tcatgatatgggtgccatcattggttggtatctttg |
356 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
46520462 |
tcatgattggggtgccatgattggttggtatctttg |
46520427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 19 - 356
Target Start/End: Complemental strand, 46494834 - 46494497
Alignment:
| Q |
19 |
gagatggaaagaatagaacatagaacagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacg |
118 |
Q |
| |
|
||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
46494834 |
gagatggaaggaatagagcacagaacagtggaagtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcctgttccttcacg |
46494735 |
T |
|
| Q |
119 |
gctttcctgaactctggtactcttggcgccaccagattgcggctctcggctccctcggctaccgcgccgtagctccggatctacgtggctatggtgacac |
218 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || || ||||| ||||| ||||| ||||| || || |
|
|
| T |
46494734 |
gattccctgaactctggtactcttggcgccaccagattgcggctctcggctctctcggttaccgggctgtggctcccgatcttcgtggttatggcgatac |
46494635 |
T |
|
| Q |
219 |
tgaggctccatcttcaataagcagctacacatgttttcacgtagttggtgacatcgtttctctcatcgacttgcttggtgtggaacaagttttccttgtt |
318 |
Q |
| |
|
||| | || ||| ||| ||| || ||| || ||| | ||||||||||| ||| | |||||||||| |||||| || || ||||| |||||||| |
|
|
| T |
46494634 |
tgatgtccccagttcggtaaacagttatacaatcttccacttggttggtgacattgttgcgctcatcgactcgcttggggttgatcaagtcttccttgtg |
46494535 |
T |
|
| Q |
319 |
ggtcatgatatgggtgccatcattggttggtatctttg |
356 |
Q |
| |
|
| ||||||| |||||||||| |||||||||||||||| |
|
|
| T |
46494534 |
gctcatgattggggtgccatcgttggttggtatctttg |
46494497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 30 - 357
Target Start/End: Complemental strand, 46490525 - 46490198
Alignment:
| Q |
30 |
aatagaacatagaacagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacggctttcctgaa |
129 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||| |||||| |
|
|
| T |
46490525 |
aatagaacacagaacagtggaagtgaatggcatcaaaatgcatattgctgagaaaggtaaagaaggacccgttgtcctgttccttcatggcttccctgaa |
46490426 |
T |
|
| Q |
130 |
ctctggtactcttggcgccaccagattgcggctctcggctccctcggctaccgcgccgtagctccggatctacgtggctatggtgacactgaggctccat |
229 |
Q |
| |
|
|||||||| || ||||||||||||||| | ||||| ||||||||||| |||||||| || ||||| ||||| ||||| ||||| ||||| || ||||| |
|
|
| T |
46490425 |
ctctggtattcatggcgccaccagatttctgctcttggctccctcggttaccgcgctgttgctccagatctccgtggttatggcgacaccgatgctccgg |
46490326 |
T |
|
| Q |
230 |
cttcaataagcagctacacatgttttcacgtagttggtgacatcgtttctctcatcgacttgcttggtgtggaacaagttttccttgttggtcatgatat |
329 |
Q |
| |
|
| || || || ||||||||| || || | ||||||||||||||| |||||||||||| ||||| || || | ||| || ||||| | ||||||| |
|
|
| T |
46490325 |
cctccattagtagctacacaatcttccatttggttggtgacatcgttgctctcatcgactcacttggcgttgaccgagtgtttcttgtagctcatgattg |
46490226 |
T |
|
| Q |
330 |
gggtgccatcattggttggtatctttgt |
357 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
46490225 |
gggtgccatcattggttggtatctttgt |
46490198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 20 - 357
Target Start/End: Complemental strand, 46517122 - 46516785
Alignment:
| Q |
20 |
agatggaaagaatagaacatagaacagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacgg |
119 |
Q |
| |
|
|||||||| || |||| || ||||||||||||||||||||||||||||||||| | || |||||||| ||||||||||| | || ||||||||||| || |
|
|
| T |
46517122 |
agatggaaggagtagagcacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatgg |
46517023 |
T |
|
| Q |
120 |
ctttcctgaactctggtactcttggcgccaccagattgcggctctcggctccctcggctaccgcgccgtagctccggatctacgtggctatggtgacact |
219 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||| |||||| ||||||| ||||||||| |||| ||||| ||||| ||||||| ||||||||| |
|
|
| T |
46517022 |
ttttcctgaaatctggtactcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctctgtggctacggtgacact |
46516923 |
T |
|
| Q |
220 |
gaggctccatcttcaataagcagctacacatgttttcacgtagttggtgacatcgtttctctcatcgacttgcttggtgtggaacaagttttccttgttg |
319 |
Q |
| |
|
|| ||||| ||||| | || ||||||||| ||| || | |||||||| |||||| |||| || |||| || |||||||| |||||||||||||| | |
|
|
| T |
46516922 |
gatgctcccacttcagttagtagctacacaattttacatttggttggtgatatcgttgctctaattgactcactgggtgtggaccaagttttccttgtgg |
46516823 |
T |
|
| Q |
320 |
gtcatgatatgggtgccatcattggttggtatctttgt |
357 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
46516822 |
ctcatgattggggtgctatcattggttggtatctttgt |
46516785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 353
Target Start/End: Complemental strand, 46464966 - 46464873
Alignment:
| Q |
260 |
tagttggtgacatcgtttctctcatcgacttgcttggtgtggaacaagttttccttgttggtcatgatatgggtgccatcattggttggtatct |
353 |
Q |
| |
|
||||||||||||||||| ||||||| |||| ||||| || || ||||| || |||||| ||||||| ||||||| | | |||||||||||| |
|
|
| T |
46464966 |
tagttggtgacatcgttgctctcatagactcacttggggttgatcaagtcttttttgttgctcatgattggggtgccttaactggttggtatct |
46464873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 142 - 356
Target Start/End: Original strand, 7475311 - 7475525
Alignment:
| Q |
142 |
tggcgccaccagattgcggctctcggctccctcggctaccgcgccgtagctccggatctacgtggctatggtgacactgaggctccatcttcaataagca |
241 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||| | ||| ||| | ||||| ||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
7475311 |
tggcgccaccagattatagctctcagctccctcggctaccatgtcgtggctactgatctccgtggctatggtgacaccgattctccatcttcaataagca |
7475410 |
T |
|
| Q |
242 |
gctacacatgttttcacgtagttggtgacatcgtttctctcatcgacttgcttggtgtggaacaagttttccttgttggtcatgatatgggtgccatcat |
341 |
Q |
| |
|
|||||||| | ||||| | ||||||||| | ||| | || || || || |||||||| || ||||| || ||||| | ||||||| |||||||||||| |
|
|
| T |
7475411 |
gctacacagggtttcatatggttggtgaccttgttgcacttatagattttcttggtgttgatcaagtgtttcttgtggctcatgattggggtgccatcat |
7475510 |
T |
|
| Q |
342 |
tggttggtatctttg |
356 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
7475511 |
tggttggtacctttg |
7475525 |
T |
|
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