View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21319_high_1 (Length: 651)
Name: NF21319_high_1
Description: NF21319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21319_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 219 - 634
Target Start/End: Complemental strand, 47001660 - 47001246
Alignment:
| Q |
219 |
taaatataaaattttacatttatacagatctctgcatcaggaacatgcttaggatgcttccttgtatctctgtcattctatttgcaggttctctgaataa |
318 |
Q |
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| T |
47001660 |
taaatataaaattttacatttatacagatctctgcatcaggaacatgcttaggatgcttccttgtatctctgtcattctatttgcaggttctctgaataa |
47001561 |
T |
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| Q |
319 |
taagatcttctcttgcttggttgtttttcacattagttatttctaaatcaatagattgtttgcttccaatatgcaggacttgcataaggaattcagtccc |
418 |
Q |
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| T |
47001560 |
taagatcttctcttgcttggttgtttttcacattagttatttctaaatcaatagattgtttgcttccaatatgcaggacttgcataaggaattcagtccc |
47001461 |
T |
|
| Q |
419 |
attctggcactcgtcggtgtactggtattgattttgtctgattatattgcttctaaactcattcctacaaaaccgaattataagtcgaggagtgccannn |
518 |
Q |
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| T |
47001460 |
attctggcactcgtcggtgtactggtattgattttgtctgattatattgcttctaaactcattcctacaaaaccgaattataagtcgaggagtgccattt |
47001361 |
T |
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| Q |
519 |
nnnnataaactttctctattttaaatgtggaacttgagtttttcctactaatactttctctgatttttcaccgaccttacatttgcattcatgaaataga |
618 |
Q |
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| T |
47001360 |
ttttataaactttctc-attttaaatgtgaaacttgagtttttcctactaatactttctctgatttttcaccgaccttacattagcattcatgaaataga |
47001262 |
T |
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| Q |
619 |
tttggtttaagaatac |
634 |
Q |
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| T |
47001261 |
tttggtttaagaatac |
47001246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 2 - 135
Target Start/End: Complemental strand, 47001865 - 47001732
Alignment:
| Q |
2 |
aatatgatgaataagacgagatcgatgtcaattttgatgagtcttcattactgagtcccttcacactgttcagtaatttctgtcttcgtagatcccaatg |
101 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47001865 |
aatatgatgaataagacgagatagatgtcaattttgatgagtcttcattactgagtcccttcacactgttcagtaatttctgtcttcgtagatcccaatg |
47001766 |
T |
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| Q |
102 |
acagctttgggagtaattttgatggataaatctg |
135 |
Q |
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| T |
47001765 |
acagctttgggagtaattttgatggataaatctg |
47001732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 133 - 227
Target Start/End: Original strand, 47001909 - 47002003
Alignment:
| Q |
133 |
ctgaacaacaaccatcgctattgttccaatacttctggaaaaccctgtgatggaaaagaattttccctttcatgagaatcatgtaataaatataa |
227 |
Q |
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| T |
47001909 |
ctgaacaacaaccatcgctattgttccaatacttctggaaaaccctgtgatggataagaattttccctttcatgagaatcatgtaataaatataa |
47002003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 135
Target Start/End: Complemental strand, 47007421 - 47007366
Alignment:
| Q |
80 |
tctgtcttcgtagatcccaatgacagctttgggagtaattttgatggataaatctg |
135 |
Q |
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||||| || |||||| ||||||||| |||| |||||| |||||||||||||||||| |
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| T |
47007421 |
tctgtgtttgtagattccaatgacaactttaggagtatttttgatggataaatctg |
47007366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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