View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21319_high_11 (Length: 422)
Name: NF21319_high_11
Description: NF21319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21319_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 245 - 406
Target Start/End: Complemental strand, 12007521 - 12007360
Alignment:
| Q |
245 |
ccaagtgataaaccaaagaaaatgaaaagatagaagtcatgtacatatggtatctaaacttcaatattatattttggcttgagatctttgtttcacttcc |
344 |
Q |
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| T |
12007521 |
ccaagtgataaaccaaagaaaaggaaaagatagaagtcatgtacatatggtatctaaacttcaatattatattttggcttgagatctttgtttcacttcc |
12007422 |
T |
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| Q |
345 |
atgtgcctttctttcactgtaggcaatcctttcacggttctgccgagaatgaatctcctcat |
406 |
Q |
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| T |
12007421 |
atgggcctttctttcactgtaggcaatcctttcacggttctgccgagaatgaatctcctcat |
12007360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 245 - 346
Target Start/End: Complemental strand, 11988683 - 11988578
Alignment:
| Q |
245 |
ccaagtgataaaccaaagaaaat----gaaaagatagaagtcatgtacatatggtatctaaacttcaatattatattttggcttgagatctttgtttcac |
340 |
Q |
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||||||||||||||||| |||| ||||||| |||||||||||||||||||||||| | ||||| | ||||||||||||| |||||||||||||||| |
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| T |
11988683 |
ccaagtgataaaccaaaaaaaaaaaaggaaaagaaagaagtcatgtacatatggtatctgatcttcagtcttatattttggctagagatctttgtttcac |
11988584 |
T |
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| Q |
341 |
ttccat |
346 |
Q |
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|||||| |
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| T |
11988583 |
ttccat |
11988578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 249 - 298
Target Start/End: Complemental strand, 12020010 - 12019961
Alignment:
| Q |
249 |
gtgataaaccaaagaaaatgaaaagatagaagtcatgtacatatggtatc |
298 |
Q |
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| T |
12020010 |
gtgatacaccaatgaaaaggaaaagatagaagtcatgtacatctggtatc |
12019961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 263 - 405
Target Start/End: Complemental strand, 29474395 - 29474252
Alignment:
| Q |
263 |
aaaatgaaaagatagaagtcatgtacatatggtatctaaacttcaatattatattttggcttg-agatctttgtttcacttccatgtgcctttctttcac |
361 |
Q |
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|||| ||||||| |||||| ||||||| |||||| | ||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||| | |
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| T |
29474395 |
aaaaggaaaagaaagaagttttgtacattatgtatctgatcttcaatattatattttggcttggagatctttgtttcactttcgtgtgcctttctttcgc |
29474296 |
T |
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| Q |
362 |
tgtaggcaatcctttcacggttctgccgagaatgaatctcctca |
405 |
Q |
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|||||| ||| ||||| |||||| | |||||| |||| ||||| |
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| T |
29474295 |
cgtaggctatcttttcatggttctactgagaataaatcccctca |
29474252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 269 - 370
Target Start/End: Original strand, 29422143 - 29422243
Alignment:
| Q |
269 |
aaaagatagaagtcatgtacatatggtatctaaacttcaatattatattttggcttgagatctttgtttcacttccatgtgcctttctttcactgtaggc |
368 |
Q |
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|||||| |||||| |||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
29422143 |
aaaagaaagaagttatgtacattatgtatctaatcttcaatattatattttggc-tgagatctttgtttcacttctgcaggcctttctttcactgtaggc |
29422241 |
T |
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| Q |
369 |
aa |
370 |
Q |
| |
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|| |
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|
| T |
29422242 |
aa |
29422243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 263 - 342
Target Start/End: Complemental strand, 29473606 - 29473526
Alignment:
| Q |
263 |
aaaatgaaaagatagaagtcatgtacatatggtatctaaacttcaatattatattttggctt-gagatctttgtttcactt |
342 |
Q |
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|||| ||||||| |||||| ||||||| |||||| | |||||||||||||||||||||| |||||||||||||||||| |
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| T |
29473606 |
aaaaggaaaagaaagaagttttgtacattatgtatctgatcttcaatattatattttggcttggagatctttgtttcactt |
29473526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 146 - 241
Target Start/End: Complemental strand, 43498049 - 43497954
Alignment:
| Q |
146 |
caaccaacaatcaatccattttgtttataggtaaaaggaatatcattctggacaggtttagcaaagcagattgaagtcaggaactaattggttagg |
241 |
Q |
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|||||||||||||| |||||||||||||||||||||| |||| ||||||| | | |||||||| ||||||||||| | ||||||| | |||||| |
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| T |
43498049 |
caaccaacaatcaacccattttgtttataggtaaaagcaataacattctgcataaatttagcaatacagattgaagttaagaactaactagttagg |
43497954 |
T |
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