View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21319_high_12 (Length: 419)
Name: NF21319_high_12
Description: NF21319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21319_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 8 - 401
Target Start/End: Original strand, 4091039 - 4091432
Alignment:
| Q |
8 |
tgagatgaactgctcaatgagttctcattttgaaaagagaggccttttggaaaaactaattgagaagccgatttcctaccttgacaaagcttctcttttt |
107 |
Q |
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| T |
4091039 |
tgagatgaactgctcaatgagttctcactttgaaaagagaggccttttggaaaaactaattgagaagccgatttcctaccttgacaaagcttctcttttt |
4091138 |
T |
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| Q |
108 |
atctttacattggttgcatttgtggtgttcattcacctaatttgtgaaaaagatggagatggtgatggattgccagatatgaaagtttcagttggcttgt |
207 |
Q |
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| T |
4091139 |
atctttacattggttgcatttgtggtgttcattcaccaaatttgtgaaaaagatggagatggtgatggattgccagatatgaaagtttcagttggcttgt |
4091238 |
T |
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| Q |
208 |
tgatggaactccttgagaatattttgttgagaccaagaggaaggatttccattctagcatgtgtttttacagctgcaatattgtttgtgcaacatggaat |
307 |
Q |
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| T |
4091239 |
tgatggaactccttgagaatattttgttgagaccaagaggaaggatttccattctagcatgtgtttttacagctgcaatattgtttgtgcaacatggaat |
4091338 |
T |
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| Q |
308 |
gccacttatggttactttttctctccattaccacattaatgatgtagtgccagacgaagaagctgtttttaatgatttatctgcttgtacaacc |
401 |
Q |
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| T |
4091339 |
gccacgtatggttactttttctctccattaccacattaatgatgtagtgccagacgaagaagctgtttttaatgatttatctgcttgtacaacc |
4091432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 51 - 340
Target Start/End: Complemental strand, 42593711 - 42593413
Alignment:
| Q |
51 |
cttttggaaaaactaattgagaagccgatttcctaccttgacaaagcttctctttttatctttacattggttgcatttgtggtgttcattcacctaattt |
150 |
Q |
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| T |
42593711 |
cttttggaaagtctaattgagaagccaatttcctaccttgacaaagcttctctttttgtctttacacttgttgcacttgtgttgttcattcgcctaatat |
42593612 |
T |
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| Q |
151 |
gtgaaaaagatggagatggtgatggattgccagatatgaaa---------gtttcagttggcttgttgatggaactccttgagaatattttgttgagacc |
241 |
Q |
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| T |
42593611 |
gtaaaaaagatgtggatggaggagggttgccagatattaaaggtaataatgtttcagttggcttattgacacaactccttgagaatattttctcgagacc |
42593512 |
T |
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| Q |
242 |
aagaggaaggatttccattctagcatgtgtttttacagctgcaatattgtttgtgcaacatggaatgccacttatggttactttttctctccattacca |
340 |
Q |
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| T |
42593511 |
acgaggaaggatttccattttggcaggtctttttagtgttgtaatactgtgtgtgcaacatggagtgccaattatggttactctttctctccattacca |
42593413 |
T |
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