View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21319_high_18 (Length: 343)
Name: NF21319_high_18
Description: NF21319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21319_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 41 - 236
Target Start/End: Complemental strand, 41921468 - 41921273
Alignment:
| Q |
41 |
cacttgaagtagtgaatttgttctagtatcgttattgcataaataaatacaataaacaagggaatataacataagaatataggaaagtgagaaacttaca |
140 |
Q |
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| T |
41921468 |
cacttgaagtagtgaatttgttctagtatcgttattgcataaataaatacaataaacaagggaatataacataagaatataggaaagtgagaaacttaca |
41921369 |
T |
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| Q |
141 |
ctgtgcgctcagttttcaagcgactagcatttttcatttttgataaatgactgtttgtagcatttggatgaaatgcaactaaagattgtgaagcat |
236 |
Q |
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| T |
41921368 |
ctgtgcgctcagttttcaagcgactagcatttttcatttttgataaatgactgtttgtagcatttggatgaaatgcaactaaagattgtgaagcat |
41921273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 234 - 339
Target Start/End: Complemental strand, 41921239 - 41921137
Alignment:
| Q |
234 |
catacattggcaggcatgatgatgatgattcttgactactgaggttaaatgttggaatatcctcaatatcttcttcatcgctctcaataccttcttcatc |
333 |
Q |
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| T |
41921239 |
catacattggcagacatgatga---tgattcttgactactgatgttaaatgttggaatatcctcaatatcttcttcatcactctcaatatcttcttcgtc |
41921143 |
T |
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| Q |
334 |
tctctc |
339 |
Q |
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| T |
41921142 |
actctc |
41921137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 339
Target Start/End: Complemental strand, 41921160 - 41921116
Alignment:
| Q |
295 |
ctcaatatcttcttcatcgctctcaataccttcttcatctctctc |
339 |
Q |
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| T |
41921160 |
ctcaatatcttcttcgtcactctcaatatcttcttcatcactctc |
41921116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 107 - 226
Target Start/End: Complemental strand, 1695489 - 1695370
Alignment:
| Q |
107 |
taacataagaatataggaaagtgagaaacttacactgtgcgctcagttttcaagcgactagcatttttcatttttgataaatgactgtttgtagcatttg |
206 |
Q |
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| T |
1695489 |
taacataagaatataggaaagtgagaaacttacactaaacgctcagttttcaggcggctagcatttttcatttttgataaacgattgattgtagcatttg |
1695390 |
T |
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| Q |
207 |
gatgaaatgcaactaaagat |
226 |
Q |
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| T |
1695389 |
gatgtaatgcaactaaagat |
1695370 |
T |
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