View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21319_high_19 (Length: 336)
Name: NF21319_high_19
Description: NF21319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21319_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 23 - 326
Target Start/End: Original strand, 14782942 - 14783242
Alignment:
| Q |
23 |
agccagcacattgaacccaagttgagacccatttgcttgaacctttgtggatgaaatagtattttgagagtaaacttgatgaggttgaaccaacaaagag |
122 |
Q |
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| T |
14782942 |
agccagcacattgaacccaagttgagacccatttgcttgaacctttgtggatgaaatagtattttgagagtaaacttgatgagattgaaccaacaaagag |
14783041 |
T |
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| Q |
123 |
taagagaaagttgattatcaaaagtggcatgtaccttttgtttgtaatggatttttgatcatttgcatgcaggtggtttttgttgttgacaaatggtgat |
222 |
Q |
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| T |
14783042 |
taagagatagttgattatcaaaagtggcatgtaccttttgtttgtaatggatttttgatcatttgcatgcaggtggtttttgttgttgacaaatggtgat |
14783141 |
T |
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| Q |
223 |
ggttgattttgatgttgttgtgtttcttcttcttgatgatcaatggcttcaatgtcaattgtgtcttctttgttggtagggttcatggtgagagattgat |
322 |
Q |
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| T |
14783142 |
ggttgattttgatgttgttgtgt---ttcttcttgatgatcaatggcttcaatgtcaattgtgtcttcattgttggtagggttcgtggtgagagattgat |
14783238 |
T |
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| Q |
323 |
gatg |
326 |
Q |
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| T |
14783239 |
gatg |
14783242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 32 - 182
Target Start/End: Original strand, 14775077 - 14775227
Alignment:
| Q |
32 |
attgaacccaagttgagacccatttgcttgaacctttgtggatgaaatagtattttgagagtaaacttgatgaggttgaaccaacaaagagtaagagaaa |
131 |
Q |
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| T |
14775077 |
attgaacccaagttgaaacccatctactagaacctttatggataaaatagtactttgagagtaaacttgaagaaagtgaccctacaaagagcaaaaggta |
14775176 |
T |
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| Q |
132 |
gttgattatcaaaagtggcatgtaccttttgtttgtaatggatttttgatc |
182 |
Q |
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| T |
14775177 |
gttaataaccaaaaggggtatgtaccttttgttagtggtggacttttgatc |
14775227 |
T |
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