View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21319_high_2 (Length: 606)
Name: NF21319_high_2
Description: NF21319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21319_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 19 - 601
Target Start/End: Complemental strand, 34536701 - 34536119
Alignment:
| Q |
19 |
gaaagaggaatggcaaccccgttccggcaaaggactgcccgtgaatcaccacaattcgagacaatgattttctccggcgtaacaacggcaacaacagcag |
118 |
Q |
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| T |
34536701 |
gaaagaggaatggcaaccccgttccggcaaaggacggcccgtgaatcaccacaattcgagacaatgattttctccggcgtaacaacggcaacaacagcag |
34536602 |
T |
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| Q |
119 |
tagaaccaacagcatcacagtgaggagtttgaagctcacacttacaactgaagctctgtttcgtcttactagaattcaacacttcttcatccattctaat |
218 |
Q |
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| T |
34536601 |
tagaaccaacagcatcacagtgaggagtttgaagctcacacttacaactgaagctctgtttcgtcttactagaattcaacacttcttcatccattctaat |
34536502 |
T |
|
| Q |
219 |
aaaactcttctccatcgttgacttccagtcaaccttctctttctctacttcttcttcaacaatttcatgcaacctttctttacacatagtcgcaacctgt |
318 |
Q |
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| T |
34536501 |
aaaactcttctccatcgttgatttccagtcaaccttctctttctctacttcttcttcaacaatttcatgcaacctttctttacacatagtcgcaacctgt |
34536402 |
T |
|
| Q |
319 |
taaaaacaaattaacgtaattaaaaaacagatccactnnnnnnnttattatgaatttatgataacgattattagaatttcgagcaattacatgtgaacaa |
418 |
Q |
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| T |
34536401 |
taaaaacaaattaacgtaattaaaaaatagatccactaaaaaaattattatgaatttatgataacgattattagaatttcgagcaattacatgtgaacaa |
34536302 |
T |
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| Q |
419 |
ccatgaccgtcgtaaacaccgaagaaatgatcttgtttttcgctacaaaacgatgaatgaacagaaacagcgtcttccatttctcttcttcttccacaaa |
518 |
Q |
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| T |
34536301 |
ccatgaccgtcgtaaacaccgaagaaatgatcttgtttttctctacaaaacgatggatgaacagaaacagcgtcttccatttctcttcttcttccacaaa |
34536202 |
T |
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| Q |
519 |
ctgatgttattccatatttaggagaacactcttcaacaacaacaactttgttttccataacaacttcgttttcctttgcttct |
601 |
Q |
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| T |
34536201 |
ccgatgttattccatatttaggagaacactcttcaacaacaaccactttgttttccaagacaacttcattttcctttgattct |
34536119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 158
Target Start/End: Complemental strand, 30836620 - 30836484
Alignment:
| Q |
22 |
agaggaatggcaaccccgttccggcaaaggactgcccgtgaatcaccacaattcgagacaatgattttctccggcgtaacaacggcaacaacagcagtag |
121 |
Q |
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| T |
30836620 |
agaggaatagcgacaccattacggcaaagaacagctcttgaatcaccacagtttgaaacgataattttgtttggagtaacaacagctacaacagctgtgg |
30836521 |
T |
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| Q |
122 |
aaccaacagcatcacagtgaggagtttgaagctcaca |
158 |
Q |
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| T |
30836520 |
atccaacagcatcacagtgaggagtttgaagctcaca |
30836484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 491 - 561
Target Start/End: Original strand, 28415686 - 28415756
Alignment:
| Q |
491 |
tcttccatttctcttcttcttccacaaactgatgttattccatatttaggagaacactcttcaacaacaac |
561 |
Q |
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| T |
28415686 |
tcttccatttctcttctccttccacaaaacaatgttattccatactttggagaacaattttcaacaacaac |
28415756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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