View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21319_high_24 (Length: 321)

Name: NF21319_high_24
Description: NF21319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21319_high_24
NF21319_high_24
[»] chr3 (4 HSPs)
chr3 (18-313)||(22750306-22750601)
chr3 (34-290)||(22727003-22727259)
chr3 (34-296)||(22739718-22739980)
chr3 (34-190)||(22740667-22740823)
[»] chr5 (4 HSPs)
chr5 (22-313)||(14372474-14372765)
chr5 (22-290)||(41451602-41451870)
chr5 (22-263)||(14240593-14240834)
chr5 (22-282)||(41438433-41438693)
[»] chr8 (2 HSPs)
chr8 (22-92)||(2301233-2301303)
chr8 (22-92)||(2325452-2325522)
[»] scaffold0019 (1 HSPs)
scaffold0019 (22-70)||(7971-8019)
[»] chr6 (1 HSPs)
chr6 (22-70)||(11672985-11673033)


Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 313
Target Start/End: Original strand, 22750306 - 22750601
Alignment:
Q  18 aaacggatcatcaaatagatatatatcagcatcttgatataaagcacgagcaatttgtactctttgtttctgtccgccgctcaaatttattcccctctcc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22750306 aaacggatcatcaaatagatatatatcagcatcttgatataaagcacgagcaatttgtactctttgtttctgtccgccgctcaaatttattcccctctcc 22750405  T
Q  118 cctataattgtttgatcgccaaatgataaaatctcgagatccttctttagtgaacatgcttcaagaaccttctcatatctttgcctttccatatccttcc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22750406 cctataattgtttgatcgccaaatgataaaatctcgagatccttctttagtgaacatgcttcaagaaccttctcatatctttgcctttccatatccttcc 22750505  T
Q  218 caaacaatatgttattttctatcttgctactttgtatccatggtgactgtgctacataagcctttgtaccacacacttttaaaatacctgatatct 313  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  22750506 caaacaatatgttattttctatcttgctactttgtatccatggcgactgtgctacataagcctttgtaccacacacttttaaaatccctgatatct 22750601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 34 - 290
Target Start/End: Original strand, 22727003 - 22727259
Alignment:
Q  34 agatatatatcagcatcttgatataaagcacgagcaatttgtactctttgtttctgtccgccgctcaaatttattcccctctcccctataattgtttgat 133  Q
    |||||||||||||||||||| || | ||||||||| |||||||||||||| |||||||| || |||||||| |||||| |||| || ||||| || ||||    
T  22727003 agatatatatcagcatcttggtaaagagcacgagcgatttgtactctttgcttctgtccaccactcaaattgattcccttctctccaataatggtctgat 22727102  T
Q  134 cgccaaatgataaaatctcgagatccttctttagtgaacatgcttcaagaaccttctcatatctttgcctttccatatccttcccaaacaatatgttatt 233  Q
    | ||||||| ||||| |||||| || ||||| | |||||||||||| |||||||||| |||  ||| ||| ||||| ||  | ||||| | ||| ||||     
T  22727103 caccaaatggtaaaacctcgaggtctttcttcaatgaacatgcttctagaaccttctaatacttttccctatccatctctctaccaaatagtatattatc 22727202  T
Q  234 ttctatcttgctactttgtatccatggtgactgtgctacataagcctttgtaccaca 290  Q
    ||||||||||| ||| |||||||| ||||| || || |||||||||||||| |||||    
T  22727203 ttctatcttgccactctgtatccacggtgattgagcaacataagcctttgttccaca 22727259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 34 - 296
Target Start/End: Complemental strand, 22739980 - 22739718
Alignment:
Q  34 agatatatatcagcatcttgatataaagcacgagcaatttgtactctttgtttctgtccgccgctcaaatttattcccctctcccctataattgtttgat 133  Q
    ||||| |||||||||| ||| || | ||||||||||||||||||||||||||||||||| || |||||||| |||||  |||| || ||||| |||||||    
T  22739980 agataaatatcagcattttggtaaagagcacgagcaatttgtactctttgtttctgtccaccactcaaattgattcctttctctccaataatggtttgat 22739881  T
Q  134 cgccaaatgataaaatctcgagatccttctttagtgaacatgcttcaagaaccttctcatatctttgcctt-tccatatccttcccaaacaatatgttat 232  Q
    | | ||||| ||||| |||||| || ||||| | |||||||||||| |||||||||||||| |||| |||| ||||| ||  | ||||| | ||| || |    
T  22739880 cacgaaatggtaaaacctcgaggtctttcttcaatgaacatgcttctagaaccttctcata-cttttccttatccatctctctaccaaatagtatattct 22739782  T
Q  233 tttctatcttgctactttgtatccatggtgactgtgctacataagcctttgtaccacacacttt 296  Q
     ||||||||||| ||| ||||||||||| || || || |||||||||||||| |||||||||||    
T  22739781 cttctatcttgccactctgtatccatggcgattgagcaacataagcctttgttccacacacttt 22739718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 34 - 190
Target Start/End: Complemental strand, 22740823 - 22740667
Alignment:
Q  34 agatatatatcagcatcttgatataaagcacgagcaatttgtactctttgtttctgtccgccgctcaaatttattcccctctcccctataattgtttgat 133  Q
    |||||||||||||||||||| || | ||||||||| ||||||| |||||| |||||||| || |||||||| |||||| |||| || ||||| || ||||    
T  22740823 agatatatatcagcatcttggtaaagagcacgagcgatttgtagtctttgcttctgtccaccactcaaattgattcccttctctccaataatggtctgat 22740724  T
Q  134 cgccaaatgataaaatctcgagatccttctttagtgaacatgcttcaagaaccttct 190  Q
    | ||||||| ||||| |||||| || ||||| | |||||||||||| ||||||||||    
T  22740723 caccaaatggtaaaacctcgaggtctttcttcaatgaacatgcttctagaaccttct 22740667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 22 - 313
Target Start/End: Complemental strand, 14372765 - 14372474
Alignment:
Q  22 ggatcatcaaatagatatatatcagcatcttgatataaagcacgagcaatttgtactctttgtttctgtccgccgctcaaatttattcccctctccccta 121  Q
    |||||||||||||||||||||||||||||||| || | ||| ||||||||||||| ||| ||||||||||| || |||||||||||||| | ||| ||||    
T  14372765 ggatcatcaaatagatatatatcagcatcttggtaaagagcgcgagcaatttgtattctctgtttctgtccaccactcaaatttattccacgctcgccta 14372666  T
Q  122 taattgtttgatcgccaaatgataaaatctcgagatccttctttagtgaacatgcttcaagaaccttctcatatctttgcctttccatatccttcccaaa 221  Q
    ||| ||| ||||| |||||||| || || || ||||||||||| || |||||||||||||| ||| ||||||| |||| | |  |||| |  |  |||||    
T  14372665 taactgtctgatcaccaaatgacaatatttccagatccttcttcagggaacatgcttcaagtaccatctcatacctttccttaaccatgtgttcaccaaa 14372566  T
Q  222 caatatgttattttctatcttgctactttgtatccatggtgactgtgctacataagcctttgtaccacacacttttaaaatacctgatatct 313  Q
    |||||| ||||  |||||| ||| |||||| ||||||||||| || || ||||| |||||||| ||||| ||||| |  || ||||||||||    
T  14372565 caatatattatcctctatcgtgccactttgaatccatggtgattgagcaacataggcctttgttccacaaactttaaggatgcctgatatct 14372474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 22 - 290
Target Start/End: Original strand, 41451602 - 41451870
Alignment:
Q  22 ggatcatcaaatagatatatatcagcatcttgatataaagcacgagcaatttgtactctttgtttctgtccgccgctcaaatttattcccctctccccta 121  Q
    ||||| ||||||||||| |||||||||||||| || | ||||||||| ||||||| ||||||||||||||| || |||||||||||||| | ||| ||||    
T  41451602 ggatcgtcaaatagatagatatcagcatcttggtaaagagcacgagctatttgtattctttgtttctgtccaccactcaaatttattccacgctcgccta 41451701  T
Q  122 taattgtttgatcgccaaatgataaaatctcgagatccttctttagtgaacatgcttcaagaaccttctcatatctttgcctttccatatccttcccaaa 221  Q
    ||| ||| ||||| |||||||| || || || | ||||||||| |  |||||||||||||| ||||| ||||| |||| |||  |||| |  |  |||||    
T  41451702 taactgtctgatcaccaaatgacaagatttccaaatccttcttcaaggaacatgcttcaagtaccttttcatacctttccctaaccatgttttcaccaaa 41451801  T
Q  222 caatatgttattttctatcttgctactttgtatccatggtgactgtgctacataagcctttgtaccaca 290  Q
    |||||| ||||  |||||||||| |||||| ||||||||||| || || ||||| |||||||| |||||    
T  41451802 caatatattatcctctatcttgccactttgaatccatggtgattgagcgacataggcctttgttccaca 41451870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 22 - 263
Target Start/End: Original strand, 14240593 - 14240834
Alignment:
Q  22 ggatcatcaaatagatatatatcagcatcttgatataaagcacgagcaatttgtactctttgtttctgtccgccgctcaaatttattcccctctccccta 121  Q
    ||||||||||||||||| |||||||||||||| || | ||| || |||||||||| ||||||||||||||| || |||||||||||||| | ||| ||||    
T  14240593 ggatcatcaaatagatagatatcagcatcttggtaaagagcgcgcgcaatttgtattctttgtttctgtccaccactcaaatttattccgcgctcgccta 14240692  T
Q  122 taattgtttgatcgccaaatgataaaatctcgagatccttctttagtgaacatgcttcaagaaccttctcatatctttgcctttccatatccttcccaaa 221  Q
    |||  |||||||| |||||||| || || || |||||||||||||   | || ||||| || ||||| ||||| |||| |||  |||| |  || |||||    
T  14240693 taaccgtttgatcaccaaatgacaagatttccagatccttctttaagtagcaagcttcgagtaccttttcatacctttccctaaccatttgtttgccaaa 14240792  T
Q  222 caatatgttattttctatcttgctactttgtatccatggtga 263  Q
    |||||| ||||  |||||||||| |||||| |||||||||||    
T  14240793 caatatattatcctctatcttgccactttgaatccatggtga 14240834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 22 - 282
Target Start/End: Original strand, 41438433 - 41438693
Alignment:
Q  22 ggatcatcaaatagatatatatcagcatcttgatataaagcacgagcaatttgtactctttgtttctgtccgccgctcaaatttattcccctctccccta 121  Q
    ||||||||||||||||| |||||||||||||| || | ||||||||| ||||||| ||||||||||||||| || |||||||||||||| | ||| ||||    
T  41438433 ggatcatcaaatagatagatatcagcatcttggtaaagagcacgagctatttgtattctttgtttctgtccaccactcaaatttattccacgctcgccta 41438532  T
Q  122 taattgtttgatcgccaaatgataaaatctcgagatccttctttagtgaacatgcttcaagaaccttctcatatctttgcctttccatatccttcccaaa 221  Q
    ||| ||| ||||| |||||||| || || || | ||||||||| |  | |||||||||||| ||||| ||||| |||| |||  |||| |  |  |||||    
T  41438533 taactgtctgatcaccaaatgacaagatttctaaatccttcttcaaggtacatgcttcaagtaccttttcatacctttccctaaccatgttttcaccaaa 41438632  T
Q  222 caatatgttattttctatcttgctactttgtatccatggtgactgtgctacataagccttt 282  Q
     ||||| ||||  |||||||||| |||||| ||||||||| | || || ||||| ||||||    
T  41438633 taatatattatcctctatcttgccactttgaatccatggtaattgagcaacataggccttt 41438693  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 92
Target Start/End: Complemental strand, 2301303 - 2301233
Alignment:
Q  22 ggatcatcaaatagatatatatcagcatcttgatataaagcacgagcaatttgtactctttgtttctgtcc 92  Q
    ||||||||||| || ||||| |||||||||||||| | ||| | ||| || |||| |||||||||||||||    
T  2301303 ggatcatcaaaaaggtatatgtcagcatcttgataaacagctctagctatctgtattctttgtttctgtcc 2301233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 92
Target Start/End: Complemental strand, 2325522 - 2325452
Alignment:
Q  22 ggatcatcaaatagatatatatcagcatcttgatataaagcacgagcaatttgtactctttgtttctgtcc 92  Q
    ||||||||||| || ||||| |||||||||||||| | ||| | ||| || |||| |||||||||||||||    
T  2325522 ggatcatcaaaaaggtatatgtcagcatcttgataaacagctctagctatctgtattctttgtttctgtcc 2325452  T

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Target: scaffold0019 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 7971 - 8019
Alignment:
Q  22 ggatcatcaaatagatatatatcagcatcttgatataaagcacgagcaa 70  Q
    |||||||| |||||||||||||||||||  ||||| | |||||||||||    
T  7971 ggatcatctaatagatatatatcagcattctgataaagagcacgagcaa 8019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 11672985 - 11673033
Alignment:
Q  22 ggatcatcaaatagatatatatcagcatcttgatataaagcacgagcaa 70  Q
    |||||||| |||||||||| |||||||| |||||| | |||||||||||    
T  11672985 ggatcatccaatagatataaatcagcattttgatagagagcacgagcaa 11673033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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