View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21319_high_27 (Length: 310)
Name: NF21319_high_27
Description: NF21319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21319_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 296
Target Start/End: Original strand, 386347 - 386624
Alignment:
| Q |
18 |
tctcgttgaaagtcaaaatgtatcaaagaagccacaaattatcatctaaggtaactactatcctcgctcgaagtattcaaataatcaaaacttggaaaaa |
117 |
Q |
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| T |
386347 |
tctcgttgaaagtcaaaatgtatcaaagaagccacaaattatcatctaaggttactactatcctcgctcgaagtattcaaataatcaaaacttgtaaaaa |
386446 |
T |
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| Q |
118 |
gttccaccttgaagatttctcaagaagattcaacaacaacaattatctgtccaaaagtgtcaaagattcaaattaaaaagaaagccgtacgccgactcat |
217 |
Q |
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| T |
386447 |
gttccac-ttgaagatttctcaagaagattcaacaacaataattatctgtccaaaagtgtcaaagattcaaattaaaaagaaagccgtacgccgactcat |
386545 |
T |
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| Q |
218 |
gcctgaaataggaactcaagaatacaacgaacttgtggaaaatcctcacaaggcttttttaaaaacaattacttcacag |
296 |
Q |
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| T |
386546 |
gcctgaaataggaactcaagaatacaacgaacttgaggaaaatcctcacaaggcttttttaaaaacaattacttcacag |
386624 |
T |
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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 210 - 296
Target Start/End: Original strand, 36926447 - 36926533
Alignment:
| Q |
210 |
cgactcatgcctgaaataggaactcaagaatacaacgaacttgtggaaaatcctcacaaggcttttttaaaaacaattacttcacag |
296 |
Q |
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| T |
36926447 |
cgactcatgcctgaaaaaggaactcaagagtacaatgaacttttggaaaatcctgacaaagcttttctgaaaacaatcacttcacag |
36926533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 211 - 296
Target Start/End: Complemental strand, 49608358 - 49608273
Alignment:
| Q |
211 |
gactcatgcctgaaataggaactcaagaatacaacgaacttgtggaaaatcctcacaaggcttttttaaaaacaattacttcacag |
296 |
Q |
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||||||||||||||| | | |||||||||||||| ||||||||||||||||| ||||| ||||||| || ||||||||||||||| |
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| T |
49608358 |
gactcatgcctgaaaaaaggactcaagaatacaatcaacttgtggaaaatcctgacaagccttttttgaagacaattacttcacag |
49608273 |
T |
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