View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21319_high_28 (Length: 305)
Name: NF21319_high_28
Description: NF21319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21319_high_28 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 291
Target Start/End: Original strand, 10220391 - 10220664
Alignment:
| Q |
18 |
gggagattctttacttgtatgattctcttcttttgcattgcatcatgtatctgtttttcttcatctttcttctgttgaatgatattcgcaatatatttaa |
117 |
Q |
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| T |
10220391 |
gggagattctttacttgtatgattctcttcttttgcattgcatcatgtatctgtttttcttcatctttcttctgttgaatgatattcgcaatatatttaa |
10220490 |
T |
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| Q |
118 |
tttagctgatttcatagcgtaccatttatattttatttacatgtaagaagaaaatgctgcagcattgcatggcgcatccccccagtttttatgctattgc |
217 |
Q |
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| T |
10220491 |
tttagctgatttcatagcgtaccatttatattttatttacatgtaagaagaaaatgctgcagcattgcatggcgcattcccccagtttttatgctattgc |
10220590 |
T |
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| Q |
218 |
aaattcataccatagtgtgataccataatattcatgattaagaaacttggctttccaatatgtcatatcatgcc |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10220591 |
aaattcataccatagtgtgataccataatattcatgattaagaaacttggctttccaatatgtcatatcatgcc |
10220664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 13853581 - 13853311
Alignment:
| Q |
18 |
gggagattctttacttgtatgattctcttctttt-----gcattgcatcatgtatctgtttttcttcatctttcttctgttgaatgatattcgcaatata |
112 |
Q |
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||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||| |
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| T |
13853581 |
gggagattctttacttgtatgattcccttcttttccttggcattgcatcatgtatctgtttttcttaatctttcttctgttgaatgatattctcaacata |
13853482 |
T |
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| Q |
113 |
tttaatttagctgatttcatagcgtaccatttatattttatttacatgtaagaagaaaatgctgcagcattgcatggcgcatccccccagtttttatgct |
212 |
Q |
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| T |
13853481 |
tttaatttacctgatttcatattgtaccatttatatttaatttacaagtaagaagaaaatgttgcagcattgcttggcacattcccccagtttttatgct |
13853382 |
T |
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| Q |
213 |
attgcaaattcataccatagtgtgataccataatattcatgattaagaaacttggctttccaatatgtcatatcatgcctatg |
295 |
Q |
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||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||| |||||| |||| |
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| T |
13853381 |
attgcaaattcatac------------ccataatattcatgattaagcaacttggttttccaatatgtcatgtcatgcttatg |
13853311 |
T |
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