View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21319_high_3 (Length: 569)
Name: NF21319_high_3
Description: NF21319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21319_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 9 - 557
Target Start/End: Original strand, 25787259 - 25787807
Alignment:
| Q |
9 |
aagttacactgtttcataatttatatagactacatcctggagcctt-tttatattgannnnnnnaatctgccctctctctccaaccttttgcagtttaag |
107 |
Q |
| |
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|||||||| | | |||||||||||||| ||||||| ||||| |||| ||| |||||| ||||||||||| |||| ||||||||||||||||||| |
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| T |
25787259 |
aagttacattatctcataatttatataaactacatgctggaaccttctttttattgattttat-aatctgccctccctcttcaaccttttgcagtttaag |
25787357 |
T |
|
| Q |
108 |
ctttgcaaggtacgatctgttcagtttggtcagaaagggataccctatctgaacacctatgatgggcgtacaatccgctatcctgatccccttattaagg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25787358 |
ctttgcaaggtacgatctgttcagtttggtcagaaagggataccctatctgaacacctatgatgggcgtacaatccgctatcctgatccccttattaagg |
25787457 |
T |
|
| Q |
208 |
ccaatgacacaatcaaactagacttggaacaaaacaagataaccgatttcatcaaatttgatgtggggaatattgttatggtgactggaggaaggaacag |
307 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25787458 |
ccaatgacacaatcaaactagacttggaacagaacaagataaccgatttcatcaaatttgatgtggggaatgttgttatggtgactggaggaaggaacag |
25787557 |
T |
|
| Q |
308 |
aggtcgtgttggtttcatcaagaacagagagaaacacatgggcacttttgagaccattcatgtccaggatgctgctggtcatgagtttgcaacccgattg |
407 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25787558 |
aggtcgtgttggtttcatcaagaacagaaagaaacacatgggcacttttgagacgattcatgtccaggatgctgctggtcatgagtttgcaacccgattg |
25787657 |
T |
|
| Q |
408 |
ggtaatgtcttcaccattggcagagggccgaaaccttgggtgtctcttcccaaaggcagaggtatcaaattgaccgtcattgaggaggctaggaagcgga |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25787658 |
ggtaatgtcttcaccattggcagagggccgaaaccttgggtgtctcttcccaaaggcagaggtatcaaattgaccgtcattgaggaggctaggaagcgga |
25787757 |
T |
|
| Q |
508 |
tggctgcttctcaacaggctgcagctgcttaaatttgattgcattatatt |
557 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25787758 |
tggctgcttctcaacaggctgcagctgcttaaatttgattgcattatatt |
25787807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 158; Significance: 8e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 98 - 499
Target Start/End: Complemental strand, 4139870 - 4139469
Alignment:
| Q |
98 |
gcagtttaagctttgcaaggtacgatctgttcagtttggtcagaaagggataccctatctgaacacctatgatgggcgtacaatccgctatcctgatccc |
197 |
Q |
| |
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|||||||||||| |||||||| ||||||||||| || || ||||| || || ||||||||||||||||||||||| || || ||||| ||||| ||||| |
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| T |
4139870 |
gcagtttaagctctgcaaggttcgatctgttcaattcggacagaagggcattccctatctgaacacctatgatggtcgcaccatccgttatccagatcca |
4139771 |
T |
|
| Q |
198 |
cttattaaggccaatgacacaatcaaactagacttggaacaaaacaagataaccgatttcatcaaatttgatgtggggaatattgttatggtgactggag |
297 |
Q |
| |
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| T |
4139770 |
ctaattaaggctaatgacaccatcaaacttgaccttgaaaacaacaagatcactgattttatcaagtttgatgtggggaatgttgtcatggttaccggag |
4139671 |
T |
|
| Q |
298 |
gaaggaacagaggtcgtgttggtttcatcaagaacagagagaaacacatgggcacttttgagaccattcatgtccaggatgctgctggtcatgagtttgc |
397 |
Q |
| |
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||||||| ||||||||||||||| |||||||||||||||||||||| | || ||||||||||| ||||| || |||||||| ||||||||||||||| |
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| T |
4139670 |
gaaggaatagaggtcgtgttggtgtcatcaagaacagagagaaacataaaggaacttttgagactattcacgttcaggatgcaagtggtcatgagtttgc |
4139571 |
T |
|
| Q |
398 |
aacccgattgggtaatgtcttcaccattggcagagggccgaaaccttgggtgtctcttcccaaaggcagaggtatcaaattgaccgtcattgaggaggct |
497 |
Q |
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|| || |||| ||||| || || ||||||| ||| | |||||||||||||||||||| ||||| | ||||||||| ||||| || ||||| |||||| |
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| T |
4139570 |
cactcggctgggcaatgtgtttactattggcaaaggaacaaaaccttgggtgtctcttcctaaaggtaaaggtatcaagttgactgttattgaagaggct |
4139471 |
T |
|
| Q |
498 |
ag |
499 |
Q |
| |
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|| |
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|
| T |
4139470 |
ag |
4139469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 8e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 98 - 503
Target Start/End: Complemental strand, 7109538 - 7109133
Alignment:
| Q |
98 |
gcagtttaagctttgcaaggtacgatctgttcagtttggtcagaaagggataccctatctgaacacctatgatgggcgtacaatccgctatcctgatccc |
197 |
Q |
| |
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|||||||||||| |||||||| || || || || ||||| |||||||| || || || ||||||||||||||||| || || |||||||| ||||| || |
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| T |
7109538 |
gcagtttaagctgtgcaaggtgcgttcagtgcaatttgggcagaaaggtatcccatacctgaacacctatgatggtcgcactatccgctaccctgaccca |
7109439 |
T |
|
| Q |
198 |
cttattaaggccaatgacacaatcaaactagacttggaacaaaacaagataaccgatttcatcaaatttgatgtggggaatattgttatggtgactggag |
297 |
Q |
| |
|
| || | ||| |||||||||||||| || ||| | || |||||||||| ||||||||||||||| ||||| |||||| | || ||||| ||||| | |
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|
| T |
7109438 |
gtcatcagggctaatgacacaatcaagctggaccttgaggaaaacaagattgtcgatttcatcaaattcgatgttgggaatgtagtgatggttactggtg |
7109339 |
T |
|
| Q |
298 |
gaaggaacagaggtcgtgttggtttcatcaagaacagagagaaacacatgggcacttttgagaccattcatgtccaggatgctgctggtcatgagtttgc |
397 |
Q |
| |
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| | ||| || || |||||||| | |||||||||||||| || || | ||| || |||||||| || || || |||||||| |||||||||||||||| |
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| T |
7109338 |
gtaagaatagggggcgtgttggagtgatcaagaacagagaaaagcataagggaacctttgagacaatccacgttcaggatgccactggtcatgagtttgc |
7109239 |
T |
|
| Q |
398 |
aacccgattgggtaatgtcttcaccattggcagagggccgaaaccttgggtgtctcttcccaaaggcagaggtatcaaattgaccgtcattgaggaggct |
497 |
Q |
| |
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||| || ||| ||||| ||||| ||||||| ||| | || || ||||| ||||||||||| || | ||||| ||||| || ||||||||||| ||| |
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| T |
7109238 |
aactcgtctggtcaatgtgttcactattggcaaggggacaaagccatgggtatctcttcccaagggtaagggtattaaattaactgtcattgaggaagct |
7109139 |
T |
|
| Q |
498 |
aggaag |
503 |
Q |
| |
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|||||| |
|
|
| T |
7109138 |
aggaag |
7109133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 98 - 429
Target Start/End: Complemental strand, 19327018 - 19326687
Alignment:
| Q |
98 |
gcagtttaagctttgcaaggtacgatctgttcagtttggtcagaaagggataccctatctgaacacctatgatgggcgtacaatccgctatcctgatccc |
197 |
Q |
| |
|
|||||| ||||| |||||||| || || || || ||||| |||||||| || || || || |||||||||||||| || || ||||| || || || ||| |
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| T |
19327018 |
gcagttcaagctctgcaaggttcgttcagtgcaatttgggcagaaaggtatcccataccttaacacctatgatggtcgcactatccgttacccagacccc |
19326919 |
T |
|
| Q |
198 |
cttattaaggccaatgacacaatcaaactagacttggaacaaaacaagataaccgatttcatcaaatttgatgtggggaatattgttatggtgactggag |
297 |
Q |
| |
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| || | ||| |||||||| ||||| || || |||| |||||||||| |||||||||||||||||||| ||||| | |||||||| ||||| | |
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|
| T |
19326918 |
gtcatcagggctaatgacaccatcaagctggatctggaggaaaacaagattgttgatttcatcaaatttgatgttgggaacgtcgttatggttactggtg |
19326819 |
T |
|
| Q |
298 |
gaaggaacagaggtcgtgttggtttcatcaagaacagagagaaacacatgggcacttttgagaccattcatgtccaggatgctgctggtcatgagtttgc |
397 |
Q |
| |
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| | ||| || || |||||||| | || |||||||||||||| || | ||| || || ||||| || || || |||||||| ||||||||||||| || |
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| T |
19326818 |
gtaagaataggggacgtgttggagtgattaagaacagagagaagcataagggaacattcgagacaatccacgttcaggatgccactggtcatgagttcgc |
19326719 |
T |
|
| Q |
398 |
aacccgattgggtaatgtcttcaccattggca |
429 |
Q |
| |
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||| || |||| ||||| || || ||||||| |
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|
| T |
19326718 |
aactcgtttggtcaatgtgtttactattggca |
19326687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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