View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21319_high_33 (Length: 264)
Name: NF21319_high_33
Description: NF21319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21319_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 99 - 246
Target Start/End: Complemental strand, 41755511 - 41755364
Alignment:
| Q |
99 |
aaggataattgattttcttaacaagcgttattgatagtactttcttcgtatagtattaaatcatttcattattccatattcataatttcatatggaccaa |
198 |
Q |
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| T |
41755511 |
aaggataattgattttcttaacaagcgttattgatactactttcttcgtatagtattaaatcatttcattattccatattcataatttcatatggaccaa |
41755412 |
T |
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| Q |
199 |
taaataggacatttgtacttttgaataaaccaataaataggacgtata |
246 |
Q |
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| T |
41755411 |
taaataggacatttgtacttttgaataaaccaataaataggacgtata |
41755364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 41755572 - 41755493
Alignment:
| Q |
1 |
atcggctgactaattcagcccataaataatttggtaaatgttaaaaatattaaatacggtataaggataattgattttctt |
81 |
Q |
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| T |
41755572 |
atcggctgactaattcagcccataaataatttggtaaatgtt-aaaatattaaatacggtataaggataattgattttctt |
41755493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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