View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21319_high_39 (Length: 238)
Name: NF21319_high_39
Description: NF21319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21319_high_39 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 4627597 - 4627804
Alignment:
| Q |
15 |
cagagaaagattcactatgttttatagaagtttttgcacacaaggatgacaccagcaaagagttgctagaatggggatcccgggttgctgctgctaacag |
114 |
Q |
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| T |
4627597 |
cagagaaagattcactatgttttatagaagtttttgcacacaaggatgacaccagcaaagagttgctagaatggggatcccgggttgctgctgctaacag |
4627696 |
T |
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| Q |
115 |
ccgtcctcctaatccccaatagaaaatcaattcctaatctgcattatgcataaaagatttataatttgtata-ttaatttggtgcattttatagtggagg |
213 |
Q |
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| T |
4627697 |
ccgtcctcctaatccccaatagaaaatcaattcctaatctgcattatgcataaaacatttataatttgtatatttaatttggtgcattttatagtggagg |
4627796 |
T |
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| Q |
214 |
acatctat |
221 |
Q |
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|||||||| |
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| T |
4627797 |
acatctat |
4627804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 53 - 129
Target Start/End: Original strand, 5332849 - 5332925
Alignment:
| Q |
53 |
cacaaggatgacaccagcaaagagttgctagaatggggatcccgggttgctgctgctaacagccgtcctcctaatcc |
129 |
Q |
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| T |
5332849 |
cacaaggatgacactagcaaagagttgcttgaatggggatcaagggtttcttctgcaaacagtcgtcctcctaatcc |
5332925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 129
Target Start/End: Original strand, 20436702 - 20436778
Alignment:
| Q |
53 |
cacaaggatgacaccagcaaagagttgctagaatggggatcccgggttgctgctgctaacagccgtcctcctaatcc |
129 |
Q |
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| T |
20436702 |
cacaaggatgacactagcaaagagttgcttgagtggggatcaagggtttcttctgcaaacagtcgtcctcctaatcc |
20436778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 129
Target Start/End: Original strand, 25606369 - 25606445
Alignment:
| Q |
53 |
cacaaggatgacaccagcaaagagttgctagaatggggatcccgggttgctgctgctaacagccgtcctcctaatcc |
129 |
Q |
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|||||||||||||| |||||||||||||| || ||||| ||| | || ||||||| || ||||||||||| ||||| |
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| T |
25606369 |
cacaaggatgacacaagcaaagagttgcttgagtggggctccagagtctctgctgccaatagccgtcctccaaatcc |
25606445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 129
Target Start/End: Original strand, 25626010 - 25626086
Alignment:
| Q |
53 |
cacaaggatgacaccagcaaagagttgctagaatggggatcccgggttgctgctgctaacagccgtcctcctaatcc |
129 |
Q |
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|||||||||||||| |||||||||||||| || ||||| ||| | || ||||||| || ||||||||||| ||||| |
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| T |
25626010 |
cacaaggatgacacaagcaaagagttgcttgagtggggctccagagtctctgctgccaatagccgtcctccaaatcc |
25626086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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