View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21319_high_44 (Length: 230)
Name: NF21319_high_44
Description: NF21319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21319_high_44 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 54572710 - 54572912
Alignment:
| Q |
18 |
aacgaggccccaaagaataaatgcaattctgtggagttcgaaacatttgcaaacgatcctgtgcccgattcaatttgtatgacggacattgtaaggtctg |
117 |
Q |
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| T |
54572710 |
aacgaggccccaaagaataaatgcaattctgtggagttcgaaacatttgcaaacgatcctgtgcccgattcaatttgtatgacggacattgtaaggtctg |
54572809 |
T |
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| Q |
118 |
atgtggcaattgaagaaacgaaccaggagccacaaatggaaaaccagagtaaagatgcaaatgtacccaacccacaaacttgcctaaatattaacaatga |
217 |
Q |
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| T |
54572810 |
atgtggcaattgaagaaacgaaccaggagccacaaatggaaaaccagagtaaagatgcaaatgtacccaacccacaaacttgcctaaatattaacaatga |
54572909 |
T |
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| Q |
218 |
tga |
220 |
Q |
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||| |
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| T |
54572910 |
tga |
54572912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 55155977 - 55156179
Alignment:
| Q |
18 |
aacgaggccccaaagaataaatgcaattctgtggagttcgaaacatttgcaaacgatcctgtgcccgattcaatttgtatgacggacattgtaaggtctg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
55155977 |
aacgaggccccaaagaataaatgcaattctgtggagttcgaaacatttgcaaacgatcctgtgcccgattcaatttgtatgacagacattgtaaggtctg |
55156076 |
T |
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| Q |
118 |
atgtggcaattgaagaaacgaaccaggagccacaaatggaaaaccagagtaaagatgcaaatgtacccaacccacaaacttgcctaaatattaacaatga |
217 |
Q |
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| T |
55156077 |
atgtggcaattgaagaaacgaaccaggagccacaaatggaaaaccagagtaaagatgcaaatgtacccaacccacaaacttgcctaaatattaacaatga |
55156176 |
T |
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| Q |
218 |
tga |
220 |
Q |
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||| |
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| T |
55156177 |
tga |
55156179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 38 - 210
Target Start/End: Original strand, 4097562 - 4097734
Alignment:
| Q |
38 |
atgcaattctgtggagttcgaaacatttgcaaacgatcctgtgcccgattcaatttgtatgacggacattgtaaggtctgatgtggcaattgaagaaacg |
137 |
Q |
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|||| ||| ||||||||||||||||||||| |||||||||||| || |||| | ||||||| ||| ||||||||||||||||||||||||||||| | | |
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| T |
4097562 |
atgcgattttgtggagttcgaaacatttgcgaacgatcctgtgtccaattctagttgtatgctggaaattgtaaggtctgatgtggcaattgaagacatg |
4097661 |
T |
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| Q |
138 |
aaccaggagccacaaatggaaaaccagagtaaagatgcaaatgtacccaacccacaaacttgcctaaatatta |
210 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||| |
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| T |
4097662 |
aatcaggagccacaaatggaaaaccagagtaaagatgcaaatgtatccaactgacaagcttgcctaaatatta |
4097734 |
T |
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