View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21319_high_45 (Length: 217)
Name: NF21319_high_45
Description: NF21319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21319_high_45 |
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Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 47710456 - 47710620
Alignment:
| Q |
1 |
tgaacctcaatatgcttgagaaattaaattattaatcgtttcactaacaaaaatataaattagagtttctttgcaatcttcctttaattgctaaaacttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
47710456 |
tgaacctcaatatgcttgagaaattaaattattaatcgcttcactaacaaaaatataaattagagcttctttgcaatcttcctttaattgctaaaacttc |
47710555 |
T |
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| Q |
101 |
taa----tatgctaactattgtacagaaaaatgataataatgctattaatatcacagccactact |
161 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47710556 |
taatatgtatgctaactattgtacagaaaaatgataataatgctattaatatcacagccactact |
47710620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 39492922 - 39493081
Alignment:
| Q |
1 |
tgaacctcaatatgcttgagaaattaaattattaatcgtttcactaacaaaaatataaattagagtttctttgcaatcttcctttaattgctaaaacttc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
39492922 |
tgaacctcaatatgcttgagaaattaaattattaatcgtttcactaacaaaaatataaattagagcttctttgcaatcttcctttaattgctaaaacttc |
39493021 |
T |
|
| Q |
101 |
taa----tatgctaactattgtacagaaaaatgataataatgctattaatatcacagcca |
156 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39493022 |
taatatgtatgctaactattgtacagaaaaatgataataatgctattaatatcacagcca |
39493081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 35839338 - 35839179
Alignment:
| Q |
1 |
tgaacctcaatatgcttgagaaattaaattattaatcgtttcactaacaaaaatataaattagagtttctttgcaatcttcctttaattgctaaaacttc |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
35839338 |
tgaacctcaatatgcttgagaaattaaattattaatcgtttcactaacaaaaatataaattagagcttctttgcaatcttcctttaattgctaaaacttc |
35839239 |
T |
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| Q |
101 |
taa----tatgctaactattgtacagaaaaatgataataatgctattaatatcacagcca |
156 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35839238 |
taatatgtatgctaactattgtacagaaaaatgataataatgctattaatatcacagcca |
35839179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 199
Target Start/End: Original strand, 44356339 - 44356382
Alignment:
| Q |
156 |
actacttcctttgttattttaccttgtaccaagtgagagtaact |
199 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
44356339 |
actacttcctgttttattttaccttgtaccaagtgagagtaact |
44356382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 5031434 - 5031464
Alignment:
| Q |
1 |
tgaacctcaatatgcttgagaaattaaatta |
31 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
5031434 |
tgaacctcaatatgcttgagaaattaaatta |
5031464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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