View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21319_high_6 (Length: 478)
Name: NF21319_high_6
Description: NF21319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21319_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 435; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Original strand, 49106701 - 49107159
Alignment:
| Q |
1 |
cgatgtgggacttatatgcaggtccaccgtgtgactggctcttacacgccactcccgtgcgtgactcaacacttattttctgctgcaaactttcattata |
100 |
Q |
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| T |
49106701 |
cgatgtgggacttatatgcagtaccaccttgtgactgactcttacacaccactcccgtgcgtgactcaacacttattttctgctgcaaactttcattata |
49106800 |
T |
|
| Q |
101 |
aatattaaatgtgatgagagattgttgaatacaacattgaaacaatgcctccagtatcaatcaaaatcaaaatgggagataagtatcatatctcaaatta |
200 |
Q |
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| T |
49106801 |
aatattaaatgtgatgagagattgttgaatacaacattgaaacaattcctccagtatcaatcaaaatcaaaatgggagataagtatcatatctcaaatta |
49106900 |
T |
|
| Q |
201 |
aaatagtctgcaattatactaactatgagttttgagtttgaaaagtgtaaggctactttcacaattagggaatttacttcataacttgtaatacttttat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49106901 |
aaatagtctgcaattatactaactatgagttttgagtttgaaaagtgtaaggctactttcacaattagggaatttacttcataacttgtaatacttttat |
49107000 |
T |
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| Q |
301 |
gctacaaaattctccgttacttgacattatcatcacaatcaattgagggaatttccatggttattaatccaaacaatatttattactctaagctacaaac |
400 |
Q |
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| T |
49107001 |
gctacaaaattctccgttacttgacattatcatcacaatcaattgagggaatttccatggttattaatccaaacaatatttattactctaagctacaaac |
49107100 |
T |
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| Q |
401 |
attgccctttctatcatatcttgaagttgtttaggcttcacaactttccttgtaggtac |
459 |
Q |
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| T |
49107101 |
attgccctttctatcatatcttgaagttgtttaggcttcacaactttccttgtaggtac |
49107159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 190 - 341
Target Start/End: Original strand, 50077860 - 50078011
Alignment:
| Q |
190 |
atctcaaattaaaatagtctgcaattatactaactatgagttttgagtttgaaaagtgtaaggctactttcacaattagggaatttacttcataacttgt |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||| |||||||| |||||| ||||||| |
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| T |
50077860 |
atctcaaattaaaatagtctgcaattatactaactatgagttttgagtttgaaaagtttaaggctacgttcataatcagggaattcacttcagaacttgt |
50077959 |
T |
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| Q |
290 |
aatacttttatgctacaaaattctccgttacttgacattatcatcacaatca |
341 |
Q |
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| T |
50077960 |
gattcttttatgctacaaaattctctattacttgacattatcatcacaatca |
50078011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 239 - 417
Target Start/End: Complemental strand, 50112228 - 50112050
Alignment:
| Q |
239 |
tgaaaagtgtaaggctactttcacaattagggaatttacttcataacttgtaatacttttatgctacaaaattctccgttacttgacattatcatcacaa |
338 |
Q |
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|||| ||| ||||||||| ||||||||| ||||||| |||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
50112228 |
tgaagagtttaaggctacgttcacaatttgggaattcacttcataacttgtgattcttttatgctacaaaattctcttttacttgacattatcatcacaa |
50112129 |
T |
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| Q |
339 |
tcaattgagggaatttccatggttattaatccaaacaatatttattactctaagctacaaacattgccctttctatcat |
417 |
Q |
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| T |
50112128 |
tcatctgagttaatttcccttgttattaattcaaacaatacttattactttaagctataaacattgcgctttctatcat |
50112050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 165; Significance: 5e-88; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 25 - 341
Target Start/End: Original strand, 10796121 - 10796421
Alignment:
| Q |
25 |
caccgtgtgactggctcttacacgccactcccgtgcgtgactcaacacttattttctgctgcaaactttcattataaatattaaatgtgatgagagattg |
124 |
Q |
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|||| |||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||| | | |||||||||| ||||||||| |
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| T |
10796121 |
caccttgtgactgactcttacacaccactcccgtgcgtgactcaccacttattttctgctgcaaattttcattatcagttttaaatgtgacgagagattg |
10796220 |
T |
|
| Q |
125 |
ttgaatacaaca-ttgaaacaatgcctccagtatcaatcaaaatcaaaatgggagataagtatcatatctcaaattaaaatagtctgcaattatactaac |
223 |
Q |
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| T |
10796221 |
ttgaatacaacaattgaaacaatgcatccagtatcaa----aatcaaaat-------------cacatctcaaattaaaatagtctgcaattatactaac |
10796303 |
T |
|
| Q |
224 |
tatgagttttgagtttgaaaagtgtaaggctactttcacaattagggaatttacttcataacttgtaatacttttatgctacaaaattctccgttacttg |
323 |
Q |
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| T |
10796304 |
tatgagttttgagtttgaaaagtttaaggctacgttcataatcagggaattcacttcagaacttgtgattcttttatgctacaaaattctctattacttg |
10796403 |
T |
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| Q |
324 |
acattatcatcacaatca |
341 |
Q |
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| T |
10796404 |
acattatcatcacaatca |
10796421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 446
Target Start/End: Complemental strand, 44769973 - 44769918
Alignment:
| Q |
390 |
aagctacaaacattgccctttctatcatatcttgaagttgtttaggcttcacaactt |
446 |
Q |
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||||||||||||||||||| | ||| |||| ||||||||||||||||||| ||||| |
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| T |
44769973 |
aagctacaaacattgccctgtatat-atatgctgaagttgtttaggcttcagaactt |
44769918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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