View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21319_low_1 (Length: 659)
Name: NF21319_low_1
Description: NF21319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21319_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Original strand, 17237836 - 17238264
Alignment:
| Q |
1 |
taaggagtagacatcttgaataaacataatcaaaatgtattaaaagagaacattatatattacatggtttaaaaatttccctagagattcatcattcaac |
100 |
Q |
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| T |
17237836 |
taaggactagacatcttgaataaacataatcaaaatgtattaaaagagaacattatagattacatggtttaaaaaattccatagagattcatcattcaac |
17237935 |
T |
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| Q |
101 |
cataatataaaagagcttagttattgatggtaataatagacaaattcaaagagaatgaaaattattcatgcaaaaatgaagaccacgggatttcgtacat |
200 |
Q |
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| T |
17237936 |
cataatataaaagagcttggttattgatggtaataatagacagattcaaatagaatgaaaattatacatgcaaaaatgaagaccacgggatttcatacat |
17238035 |
T |
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| Q |
201 |
a-ttttcccatagttgtatgaactttattatcttcattgtgattgatcttttatttttcgataatttctatgacatgtcttttgagcggatcaatccaat |
299 |
Q |
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| T |
17238036 |
atttttcccatagttgtatgaactttatcatcttcattgtgattgatc-tttatgtttcggtaatttctatgacatgtcttttgagcggatcaatccaat |
17238134 |
T |
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| Q |
300 |
gatctataccaaaaagactacgacaaacctataaagttgtttggttaaaaaattacaagattcacaatgattcaattcaaaacattatatattctttact |
399 |
Q |
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| T |
17238135 |
gatctatactaaaaagactacgacaaacctataaagttgtttggttagaaaattacaagattcacaatgattcaattcaaaacattacatattctttact |
17238234 |
T |
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| Q |
400 |
aaattatcagtaattcactctaaaccgtct |
429 |
Q |
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| T |
17238235 |
aaattatcagtaactcactctaaaccgtct |
17238264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 459 - 515
Target Start/End: Original strand, 17238294 - 17238350
Alignment:
| Q |
459 |
cactcgatcaaacactaaaatccatgctatggtggaaagtcattagtttttccctta |
515 |
Q |
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| T |
17238294 |
cactcgatcaaacactaaaattcatgctatggtggaaagtcattagttttttcctta |
17238350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 594 - 640
Target Start/End: Original strand, 17238351 - 17238397
Alignment:
| Q |
594 |
agaggttacactgcatcactttttcatcttcttctttttgagctaag |
640 |
Q |
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| T |
17238351 |
agaggttacactgcatcactttttcatcttcttctttttgagttaag |
17238397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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