View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21319_low_10 (Length: 465)
Name: NF21319_low_10
Description: NF21319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21319_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 107 - 410
Target Start/End: Original strand, 2446410 - 2446724
Alignment:
| Q |
107 |
gtttataatgatataacggaaaagagaaaatggtgtagcgtgtgcgtggaaattggaatgattgaaagagtaaaatatgagtaatgtaagcatgtg---- |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2446410 |
gtttataatgatataacggaaaagagaaaatggtgtagcgtgtgcgtggaaattggaatgattgaaagagtaaaatatgagtaatgtaagcatgtgattg |
2446509 |
T |
|
| Q |
203 |
--attgagaagctaaatctaaatccaaagcatagcgttcattttcattcattcatttattatcaattaatcaatcaatagtatattaataattctctacc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2446510 |
tgattgagaagctaaatctaaatccaaagcatagcgttcattttcattcattcatttattatcaattaatcaatcaatagtatattaataattctctacc |
2446609 |
T |
|
| Q |
301 |
ttcactccactctcaaacttcaaagac-----aacataacacagtcaacaagtttggttccttattatcatcaaaacaatatcatgggacaaatcttcga |
395 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2446610 |
ttcactccactctcaaacttcaaagacaacataacataacacagtcaacaagtttggttccttattatcatcaaaacaatatcatgggacaaatcttcga |
2446709 |
T |
|
| Q |
396 |
taaattacaaggtta |
410 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
2446710 |
taaattacaaggtta |
2446724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University