View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21319_low_14 (Length: 400)

Name: NF21319_low_14
Description: NF21319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21319_low_14
NF21319_low_14
[»] chr4 (17 HSPs)
chr4 (13-400)||(49106387-49106774)
chr4 (45-370)||(49108523-49108848)
chr4 (54-354)||(50077109-50077397)
chr4 (60-295)||(11652298-11652532)
chr4 (61-295)||(3461049-3461282)
chr4 (46-257)||(26984561-26984769)
chr4 (62-234)||(21503706-21503877)
chr4 (87-257)||(26998673-26998842)
chr4 (162-375)||(49533638-49533844)
chr4 (150-257)||(48205836-48205943)
chr4 (157-255)||(41013548-41013646)
chr4 (153-226)||(35806165-35806238)
chr4 (156-235)||(51578274-51578352)
chr4 (155-198)||(54677590-54677633)
chr4 (155-255)||(26982549-26982646)
chr4 (202-255)||(6431957-6432010)
chr4 (221-257)||(34481155-34481191)
[»] chr1 (22 HSPs)
chr1 (50-371)||(38175425-38175746)
chr1 (54-270)||(14708570-14708786)
chr1 (51-262)||(14652525-14652736)
chr1 (51-262)||(14662316-14662527)
chr1 (61-296)||(14679825-14680060)
chr1 (120-296)||(14674447-14674623)
chr1 (120-269)||(14681592-14681741)
chr1 (54-270)||(14654239-14654455)
chr1 (54-270)||(14664030-14664246)
chr1 (61-269)||(14683743-14683951)
chr1 (54-270)||(14716283-14716499)
chr1 (60-294)||(28366104-28366338)
chr1 (121-296)||(14669675-14669850)
chr1 (121-296)||(14706054-14706229)
chr1 (51-270)||(33988062-33988280)
chr1 (143-265)||(14667099-14667221)
chr1 (167-269)||(14676625-14676727)
chr1 (155-257)||(11872481-11872583)
chr1 (177-256)||(37422175-37422254)
chr1 (190-266)||(28698549-28698625)
chr1 (144-214)||(7448416-7448486)
chr1 (131-209)||(14703133-14703211)
[»] chr6 (9 HSPs)
chr6 (54-354)||(10795789-10796088)
chr6 (54-354)||(10791551-10791850)
chr6 (80-219)||(11333273-11333413)
chr6 (65-255)||(8875696-8875887)
chr6 (145-262)||(30521242-30521359)
chr6 (64-209)||(13136607-13136752)
chr6 (156-255)||(21216032-21216131)
chr6 (340-400)||(10796110-10796170)
chr6 (62-135)||(10509478-10509551)
[»] chr5 (9 HSPs)
chr5 (54-356)||(7524875-7525176)
chr5 (50-295)||(3643607-3643850)
chr5 (69-270)||(1716370-1716567)
chr5 (65-257)||(4103250-4103440)
chr5 (83-239)||(16037881-16038036)
chr5 (149-229)||(5350672-5350752)
chr5 (191-255)||(19261152-19261216)
chr5 (83-180)||(33968558-33968654)
chr5 (145-209)||(13636365-13636429)
[»] chr8 (15 HSPs)
chr8 (50-362)||(40054212-40054524)
chr8 (54-295)||(41841052-41841292)
chr8 (50-295)||(44878950-44879194)
chr8 (50-295)||(44880727-44880971)
chr8 (54-265)||(10944298-10944509)
chr8 (145-257)||(37679760-37679872)
chr8 (163-255)||(37682064-37682156)
chr8 (126-270)||(42555053-42555198)
chr8 (138-245)||(44582870-44582977)
chr8 (189-295)||(42220880-42220985)
chr8 (82-202)||(42554589-42554709)
chr8 (188-270)||(42092013-42092094)
chr8 (219-269)||(42872514-42872564)
chr8 (85-202)||(11177945-11178062)
chr8 (156-209)||(44583110-44583162)
[»] chr2 (26 HSPs)
chr2 (52-362)||(43849952-43850259)
chr2 (53-268)||(32918074-32918289)
chr2 (51-257)||(30733993-30734199)
chr2 (54-296)||(30731974-30732216)
chr2 (146-263)||(2841008-2841125)
chr2 (51-270)||(8973304-8973523)
chr2 (62-257)||(19232307-19232501)
chr2 (50-265)||(9008018-9008233)
chr2 (51-270)||(9026778-9026997)
chr2 (51-270)||(9020839-9021058)
chr2 (145-270)||(9030390-9030515)
chr2 (189-270)||(9032045-9032126)
chr2 (181-270)||(9023439-9023528)
chr2 (195-270)||(8979314-8979389)
chr2 (124-257)||(6471679-6471810)
chr2 (155-255)||(10763878-10763978)
chr2 (83-234)||(17225591-17225743)
chr2 (149-270)||(8992140-8992262)
chr2 (145-270)||(9016485-9016614)
chr2 (195-269)||(8984686-8984760)
chr2 (82-213)||(8912983-8913116)
chr2 (145-270)||(8988447-8988573)
chr2 (145-231)||(17275862-17275948)
chr2 (146-245)||(35701906-35702005)
chr2 (224-257)||(39814117-39814150)
chr2 (150-186)||(31659782-31659818)
[»] chr7 (3 HSPs)
chr7 (79-262)||(27134511-27134694)
chr7 (145-256)||(8128149-8128259)
chr7 (63-132)||(22079645-22079714)
[»] scaffold0549 (1 HSPs)
scaffold0549 (145-211)||(5447-5513)
[»] chr3 (1 HSPs)
chr3 (214-257)||(15758562-15758605)


Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 13 - 400
Target Start/End: Original strand, 49106387 - 49106774
Alignment:
Q  13 aatattgaagtgacctctccccccaaatactagaaacattgaactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacat 112  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  49106387 aatattgaagtgacctctccccccaaaaactagaaacattgaactagaattggtggggtgcgcctagctcatgcaatagtgcaacacatgagcgacacat 49106486  T
Q  113 gagaaatctagtagcaagctactaagatgacttctccccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgat 212  Q
     ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49106487 aagaaatccagtagcaagctactaaggtgacttctccccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgat 49106586  T
Q  213 aagaacagatactacacttgatcttagccaaaaggccgagaaagggatgagttgaaagggtggctggcttctgcttttatatcaactgtctaatcagttc 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49106587 aagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagggtggctggcttctgcttttatatcaactgtctaatcagttc 49106686  T
Q  313 ctttcttcattacccgatgtgggacttatatgcagtaccaccttgtgactggctcttacacacaactcccgtgcgtgactcaacactt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  49106687 ctttcttcattacccgatgtgggacttatatgcagtaccaccttgtgactgactcttacacaccactcccgtgcgtgactcaacactt 49106774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 45 - 370
Target Start/End: Original strand, 49108523 - 49108848
Alignment:
Q  45 gaaacattgaactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgact 144  Q
    |||| ||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| || | ||||||||||||  |||||||    
T  49108523 gaaaaattaaactaggattggtggggtgcgcctagctcatgcaatagtgcaacacatgagcgacacataagaagtccaatagcaagctactgtgatgact 49108622  T
Q  145 tctccccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaa 244  Q
    ||||||||||||||||||||||||||||||||||| ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49108623 tctccccctcaaaaaagtaatttaatatcgtgtgacccattgagtcacatatcagatattaaactgataagaacagatactacacttgatcttagccaaa 49108722  T
Q  245 aggccgagaaagggatgagttgaaagggtggctggcttctgcttttatatcaactgtctaatcagttcctttcttcattacccgatgtgggacttatatg 344  Q
    ||||||||||||| |||||||||||    |||||||||||| |||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||    
T  49108723 aggccgagaaaggtatgagttgaaatataggctggcttctgattttatatcaactgtctattcagttcctttccttattacccgatgtgggacttatatg 49108822  T
Q  345 cagtaccaccttgtgactggctctta 370  Q
    ||||||||||||||||||| ||||||    
T  49108823 cagtaccaccttgtgactgactctta 49108848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 54 - 354
Target Start/End: Original strand, 50077109 - 50077397
Alignment:
Q  54 aactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccct 153  Q
    |||||||||||||||||||  |||| ||||||||||||||||||           |||||||||  | | |||||||||| | |  || |||||||||||    
T  50077109 aactagaattggtggggtgtacctaactcatgcaatagtgcaac-----------acatgagaagcccaatagcaagctattgaagtggcttctccccct 50077197  T
Q  154 caaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 253  Q
    |||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50077198 caaaaaagtaatttaatatcatgtgaaccattggaacacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 50077297  T
Q  254 aagggatgagttgaaagggtggctggcttctgcttttatatcaactgtctaatcagttcctttcttcattacccgatgtgggacttatatgcagtaccac 353  Q
    |||| ||||||||||||    |||||||||||||||||||||||||||| | | |||| |||||||||||||||||| ||||||||||||||||||||||    
T  50077298 aaggtatgagttgaaagaagagctggcttctgcttttatatcaactgtc-acttagtttctttcttcattacccgatatgggacttatatgcagtaccac 50077396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 60 - 295
Target Start/End: Original strand, 11652298 - 11652532
Alignment:
Q  60 aattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccctcaaaaa 159  Q
    ||||||||||||||||| ||| |||||||||||||||| |||  |||||||   ||||  | | |||||||||| |    || |||||||||||||||||    
T  11652298 aattggtggggtgcgcc-agcccatgcaatagtgcaacacataggcgacactcaagaagcccaatagcaagctattggagtggcttctccccctcaaaaa 11652396  T
Q  160 agtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggga 259  Q
    | |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  11652397 aataatttaatatcgtgtgacccattgggccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggta 11652496  T
Q  260 tgagttgaaagggtggctggcttctgcttttatatc 295  Q
    |||||| ||||   || ||||||||| |||||||||    
T  11652497 tgagttaaaagatgggttggcttctggttttatatc 11652532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 61 - 295
Target Start/End: Original strand, 3461049 - 3461282
Alignment:
Q  61 attggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccctcaaaaaa 160  Q
    |||||||||||| ||| |||  |||||||||||||||||||   ||||||  |||||| | | |||||||||| | | ||| ||||||||||| ||||||    
T  3461049 attggtggggtgtgcc-agcctatgcaatagtgcaacgcatagacgacactcgagaaacccaatagcaagctattgaaatggcttctcccccttaaaaaa 3461147  T
Q  161 gtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaagggat 260  Q
    ||||||||||||||||||| ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  3461148 gtaatttaatatcgtgtgacccattgagtcacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtat 3461247  T
Q  261 gagttgaaagggtggctggcttctgcttttatatc 295  Q
    || ||||||| |  ||| |||| || |||||||||    
T  3461248 gaattgaaagagatgctcgcttatggttttatatc 3461282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 46 - 257
Target Start/End: Original strand, 26984561 - 26984769
Alignment:
Q  46 aaacattgaactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgactt 145  Q
    |||||||||||| ||||||||||| |||||| ||| |||||||||||||||||||   ||||||| |||||   | || |||||||||||| |  ||||     
T  26984561 aaacattgaact-gaattggtgggatgcgcc-agcccatgcaatagtgcaacgcaaaggcgacacttgagagcccaagcagcaagctactaggcagact- 26984657  T
Q  146 ctccccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaa 245  Q
    ||| ||||  |||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26984658 ctctccctttaaaaagtaatttaatatcgtgtggaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaa 26984757  T
Q  246 ggccgagaaagg 257  Q
    ||||||||||||    
T  26984758 ggccgagaaagg 26984769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 62 - 234
Target Start/End: Complemental strand, 21503877 - 21503706
Alignment:
Q  62 ttggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccctcaaaaaag 161  Q
    ||||||||||||||| |||  ||||||||||||||||||| |||||||| |||||| |  | |||||||||| |  |||||||||||||||||||||||     
T  21503877 ttggtggggtgcgcc-agcctatgcaatagtgcaacgcataagcgacacttgagaagttcaatagcaagctattgtgatgacttctccccctcaaaaaaa 21503779  T
Q  162 taatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgat 234  Q
    |||||||||||||||||| | ||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  21503778 taatttaatatcgtgtgacctattgagccacatatcagatattaaactgataagaacagatactacacttgat 21503706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 87 - 257
Target Start/End: Original strand, 26998673 - 26998842
Alignment:
Q  87 aatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccctcaaaaaagtaatttaatatcgtgtgatccattg 186  Q
    ||||||||||||||   ||||||| |||||   | || |||||||||||| |  |||| ||| |||| ||||||||||||||||||||||||  ||||||    
T  26998673 aatagtgcaacgcaaaggcgacacttgagagcccaagcagcaagctactaggcagact-ctctccctaaaaaaagtaatttaatatcgtgtggaccattg 26998771  T
Q  187 gaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaagg 257  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26998772 gtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaagg 26998842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 162 - 375
Target Start/End: Original strand, 49533638 - 49533844
Alignment:
Q  162 taatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaagggatg 261  Q
    |||||||||||||||||| | ||||    ||||||||||||||||     |||||||||||| | |||||||||||||||||  |||||||||||| |||    
T  49533638 taatttaatatcgtgtgacctattgagtaacatatcagatattaa-----taagaacagata-tgcacttgatcttagccaag-ggccgagaaaggtatg 49533730  T
Q  262 agttgaaagggtggctggcttctgcttttatatcaactgtctaatcagttcctttcttcattacccgatgtgggacttatatgcagtaccaccttgtgac 361  Q
     |||| ||    |||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||  |||||||    
T  49533731 ggttggaataagggctggcttctggttttatatcaactgtctaatcagtttctttcttcattagccgatgtgggacttttatgcagtaccattttgtgac 49533830  T
Q  362 tggctcttacacac 375  Q
    || |||||||||||    
T  49533831 tgactcttacacac 49533844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 150 - 257
Target Start/End: Complemental strand, 48205943 - 48205836
Alignment:
Q  150 ccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggcc 249  Q
    |||||||||||||||||||||||| ||| | ||| ||| |||||||| |||||||||| | ||||||||||||||||||||| |||||||| ||||||||    
T  48205943 ccctcaaaaaagtaatttaatatcatgtaaaccaatggtccacatataagatattaaattaataagaacagatactacacttaatcttagctaaaaggcc 48205844  T
Q  250 gagaaagg 257  Q
    ||||||||    
T  48205843 gagaaagg 48205836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 157 - 255
Target Start/End: Original strand, 41013548 - 41013646
Alignment:
Q  157 aaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaa 255  Q
    |||| |||||||||| | ||||| || |||| |||||||||||||||||||| |||||||||| ||| || |||| |||||| ||||||||||||||||    
T  41013548 aaaaataatttaataccatgtgaacccttggtccacatatcagatattaaacggataagaacatatattatacttaatcttaaccaaaaggccgagaaa 41013646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 153 - 226
Target Start/End: Complemental strand, 35806238 - 35806165
Alignment:
Q  153 tcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatacta 226  Q
    |||||||||||||||||||||||| ||  |||| ||  |||||||| |||||||||||||||||||| ||||||    
T  35806238 tcaaaaaagtaatttaatatcgtgcgactcattagattacatatcatatattaaactgataagaacaaatacta 35806165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 235
Target Start/End: Complemental strand, 51578352 - 51578274
Alignment:
Q  156 aaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatc 235  Q
    |||||||||||||||||||||||||| |||| |||| |||| ||||| | |||| ||||||||| ||| |||||||||||    
T  51578352 aaaaagtaatttaatatcgtgtgatctattgaaccatatattagata-tgaactaataagaacatatattacacttgatc 51578274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 155 - 198
Target Start/End: Complemental strand, 54677633 - 54677590
Alignment:
Q  155 aaaaaagtaatttaatatcgtgtgatccattggaccacatatca 198  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  54677633 aaaaaagtaatttaatatcgtgtgatccattagaccacatatca 54677590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 255
Target Start/End: Complemental strand, 26982646 - 26982549
Alignment:
Q  155 aaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaa 254  Q
    |||||| | |||||||||| ||| |  |||||  |||||||| ||||| |||||| ||||   ||||| |||||||||||||||||||| ||||||||||    
T  26982646 aaaaaaatgatttaatatcatgtaaatcattgatccacatattagatactaaactaataa---cagatgctacacttgatcttagccaagaggccgagaa 26982550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 202 - 255
Target Start/End: Original strand, 6431957 - 6432010
Alignment:
Q  202 attaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaa 255  Q
    |||||||| ||||||| |||||||| || ||||||||||||| |||||||||||    
T  6431957 attaaactaataagaagagatactaaacctgatcttagccaataggccgagaaa 6432010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 257
Target Start/End: Original strand, 34481155 - 34481191
Alignment:
Q  221 atactacacttgatcttagccaaaaggccgagaaagg 257  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  34481155 atactacactcgatcttagccaaaaggctgagaaagg 34481191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 50 - 371
Target Start/End: Original strand, 38175425 - 38175746
Alignment:
Q  50 attgaactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctcc 149  Q
    |||||||||||||||||||||||||||  ||| ||| ||||||||||| ||| |||||||||||| ||| | || ||||||||||| || ||  ||||||    
T  38175425 attgaactagaattggtggggtgcgccaggcttatgtaatagtgcaacacataagcgacacatgataaacccagcagcaagctactgaggtggtttctcc 38175524  T
Q  150 ccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggcc 249  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38175525 ccctcaaaaaagtaatttaatatcgtgtgacccattggaacacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggcc 38175624  T
Q  250 gagaaagggatgagttgaaagggtggctggcttctgcttttatatcaactgtctaatcagttcctttcttcattacccgatgtgggacttatatgcagta 349  Q
    |||||||| ||||||||||| |  | || || ||||||||||||| |||||| || | |||| |||||||||||||||||||||||||||||||||||||    
T  38175625 gagaaaggtatgagttgaaatgaagcctcgcatctgcttttatatgaactgtatacttagtttctttcttcattacccgatgtgggacttatatgcagta 38175724  T
Q  350 ccaccttgtgactggctcttac 371  Q
    |||||||||||| | |||||||    
T  38175725 ccaccttgtgaccgactcttac 38175746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 54 - 270
Target Start/End: Complemental strand, 14708786 - 14708570
Alignment:
Q  54 aactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccct 153  Q
    |||| ||||||||||||||||||  ||  ||||  ||||||||| |||   ||||||| |||||  ||| ||||||||||||||  |||| |||||||||    
T  14708786 aacttgaattggtggggtgcgccaggccaatgctgtagtgcaacacattgacgacacaagagaagcctaatagcaagctactaaagtgacctctccccct 14708687  T
Q  154 caaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 253  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14708686 caaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 14708587  T
Q  254 aagggatgagttgaaag 270  Q
    |||| ||||||||||||    
T  14708586 aaggtatgagttgaaag 14708570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 51 - 262
Target Start/End: Complemental strand, 14652736 - 14652525
Alignment:
Q  51 ttgaactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccc 150  Q
    ||||||| ||||||||||||||||||  ||  |||| ||||||||||||||  |  ||||  |||||  |||||||||||||||||| ||| ||||||||    
T  14652736 ttgaacttgaattggtggggtgcgccacgccaatgctatagtgcaacgcattggaaacactcgagaagcctagtagcaagctactaaaatggcttctccc 14652637  T
Q  151 cctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccg 250  Q
    ||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14652636 cctcaaaaaagtaatttaatatcgtgtggaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccg 14652537  T
Q  251 agaaagggatga 262  Q
    ||||||| ||||    
T  14652536 agaaaggtatga 14652525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 51 - 262
Target Start/End: Complemental strand, 14662527 - 14662316
Alignment:
Q  51 ttgaactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccc 150  Q
    ||||||| ||||||||||||||||||  ||  |||| ||||||||||||||  |  ||||  |||||  |||||||||||||||||| ||| ||||||||    
T  14662527 ttgaacttgaattggtggggtgcgccacgccaatgctatagtgcaacgcattggaaacactcgagaagcctagtagcaagctactaaaatggcttctccc 14662428  T
Q  151 cctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccg 250  Q
    ||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14662427 cctcaaaaaagtaatttaatatcgtgtggaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccg 14662328  T
Q  251 agaaagggatga 262  Q
    ||||||| ||||    
T  14662327 agaaaggtatga 14662316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 61 - 296
Target Start/End: Complemental strand, 14680060 - 14679825
Alignment:
Q  61 attggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccctcaaaaaa 160  Q
    |||||| ||||||||| |||  ||||  |||||||||||||  || ||||   ||||  |||||||||||||||||| ||| ||||||||||||||||||    
T  14680060 attggtcgggtgcgccaagccaatgctgtagtgcaacgcattggcaacactcaagaagcctagtagcaagctactaatatggcttctccccctcaaaaaa 14679961  T
Q  161 gtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaagggat 260  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  14679960 gtaatttaatatcatgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtat 14679861  T
Q  261 gagttgaaagggtggctggcttctgcttttatatca 296  Q
    |||||| |||  ||||| | | ||||||||||||||    
T  14679860 gagttggaagattggctaggtgctgcttttatatca 14679825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 120 - 296
Target Start/End: Complemental strand, 14674623 - 14674447
Alignment:
Q  120 ctagtagcaagctactaagatgacttctccccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaaca 219  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||    
T  14674623 ctagtagcaagctactaaaatggcttctccccctcaaaaaagtaatttaatatcatgtgaaccattggtccacatatcagatattaaactgataagaaca 14674524  T
Q  220 gatactacacttgatcttagccaaaaggccgagaaagggatgagttgaaagggtggctggcttctgcttttatatca 296  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| |||  ||||| | | ||||||||||||||    
T  14674523 gatactacacttgatcttagccaaaaggccgagaaaggtatgagttggaagattggctaggtgctgcttttatatca 14674447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 120 - 269
Target Start/End: Complemental strand, 14681741 - 14681592
Alignment:
Q  120 ctagtagcaagctactaagatgacttctccccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaaca 219  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  14681741 ctagtagcaagctactaaaatggcttctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaaca 14681642  T
Q  220 gatactacacttgatcttagccaaaaggccgagaaagggatgagttgaaa 269  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||    
T  14681641 gatactacacttgatcttagccaaaaggccgagaaaggtataagttgaaa 14681592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 54 - 270
Target Start/End: Original strand, 14654239 - 14654455
Alignment:
Q  54 aactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccct 153  Q
    |||| |||||||||||||| ||| |||  |||| ||||||||||  ||  |||||||| ||||   || ||||||||||||| |  || | |||||||||    
T  14654239 aacttgaattggtggggtgagccaagccaatgctatagtgcaacatattggcgacacacgagaggactcgtagcaagctactgaagtggcctctccccct 14654338  T
Q  154 caaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 253  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14654339 caaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 14654438  T
Q  254 aagggatgagttgaaag 270  Q
    |||| ||||||||||||    
T  14654439 aaggtatgagttgaaag 14654455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 54 - 270
Target Start/End: Original strand, 14664030 - 14664246
Alignment:
Q  54 aactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccct 153  Q
    |||| |||||||||||||| ||| |||  |||| ||||||||||  ||  |||||||| ||||   || ||||||||||||| |  || | |||||||||    
T  14664030 aacttgaattggtggggtgagccaagccaatgctatagtgcaacatattggcgacacacgagaggactcgtagcaagctactgaagtggcctctccccct 14664129  T
Q  154 caaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 253  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14664130 caaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 14664229  T
Q  254 aagggatgagttgaaag 270  Q
    |||| ||||||||||||    
T  14664230 aaggtatgagttgaaag 14664246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 61 - 269
Target Start/End: Complemental strand, 14683951 - 14683743
Alignment:
Q  61 attggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccctcaaaaaa 160  Q
    ||||||||||||| || |||  |||| |||||||||| |||  | |||||| ||||   ||||||||||||||||||  |  | ||||||||||||||||    
T  14683951 attggtggggtgcaccaagccaatgctatagtgcaacacattggtgacacacgagaggactagtagcaagctactaaagttgcctctccccctcaaaaaa 14683852  T
Q  161 gtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaagggat 260  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  14683851 gtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtat 14683752  T
Q  261 gagttgaaa 269  Q
    |||||||||    
T  14683751 gagttgaaa 14683743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 54 - 270
Target Start/End: Complemental strand, 14716499 - 14716283
Alignment:
Q  54 aactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccct 153  Q
    |||| ||||||||||||||| || |||  |||| |||||||||| |||  |||||||| ||||    |||||||||||||||||  |  | |||||||||    
T  14716499 aacttgaattggtggggtgcaccaagccaatgctatagtgcaacacattggcgacacacgagaggattagtagcaagctactaaagttgcctctccccct 14716400  T
Q  154 caaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 253  Q
    |||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14716399 caaaaaagtaatttaatatcgtgtgaaccattggtccacatattagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 14716300  T
Q  254 aagggatgagttgaaag 270  Q
    |||| ||||||||||||    
T  14716299 aaggtatgagttgaaag 14716283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 60 - 294
Target Start/End: Original strand, 28366104 - 28366338
Alignment:
Q  60 aattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccctcaaaaa 159  Q
    |||||||||| |||||| |||  ||||||||||||||||||| | |||||||||| | | |||||||||||||||||  ||    ||||||||| |||||    
T  28366104 aattggtgggatgcgcc-agccaatgcaatagtgcaacgcataaacgacacatgaaagacctagtagcaagctactataatagtctctcccccttaaaaa 28366202  T
Q  160 agtaatttaatatcgtgtgatccattggac-cacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggg 258  Q
    |||||||||||||||||||| |||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  28366203 agtaatttaatatcgtgtgacccattggggtcacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggt 28366302  T
Q  259 atgagttgaaagggtggctggcttctgcttttatat 294  Q
    |||||||||||| | || | || |||||||||||||    
T  28366303 atgagttgaaagaggggttcgcatctgcttttatat 28366338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 121 - 296
Target Start/End: Original strand, 14669675 - 14669850
Alignment:
Q  121 tagtagcaagctactaagatgacttctccccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacag 220  Q
    |||||||||||||||||  |  | ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  14669675 tagtagcaagctactaaagttgcctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacag 14669774  T
Q  221 atactacacttgatcttagccaaaaggccgagaaagggatgagttgaaagggtggctggcttctgcttttatatca 296  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||   |||| | | ||||||||||||||    
T  14669775 atactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatatca 14669850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 121 - 296
Target Start/End: Complemental strand, 14706229 - 14706054
Alignment:
Q  121 tagtagcaagctactaagatgacttctccccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacag 220  Q
    |||||||||||||||||  |  | ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  14706229 tagtagcaagctactaaagttgcctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacag 14706130  T
Q  221 atactacacttgatcttagccaaaaggccgagaaagggatgagttgaaagggtggctggcttctgcttttatatca 296  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||   |||| | | ||||||||||||||    
T  14706129 atactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcggtgctgcttttatatca 14706054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 51 - 270
Target Start/End: Complemental strand, 33988280 - 33988062
Alignment:
Q  51 ttgaactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccc 150  Q
    ||||||| |||| |||||||||||||   ||  ||||||||||||  |||| |||||||| ||| ||| | | |||||||||| | | ||| | ||||||    
T  33988280 ttgaacttgaatcggtggggtgcgccggcctt-tgcaatagtgcagagcataagcgacacttgaaaaacccaatagcaagctattgaaatggcctctccc 33988182  T
Q  151 cctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccg 250  Q
    ||| |||||||||||||||||||||||||  |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33988181 ccttaaaaaagtaatttaatatcgtgtgactcattgagccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccg 33988082  T
Q  251 agaaagggatgagttgaaag 270  Q
    ||||||| ||||||||||||    
T  33988081 agaaaggtatgagttgaaag 33988062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 143 - 265
Target Start/End: Original strand, 14667099 - 14667221
Alignment:
Q  143 cttctccccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagcca 242  Q
    |||||||||||  |||||||||||||||||| ||||| ||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  14667099 cttctccccctagaaaaagtaatttaatatcatgtgaaccattggtccacgtatcagatattaaactaataagaacagatactacacttgatcttagcca 14667198  T
Q  243 aaaggccgagaaagggatgagtt 265  Q
    ||||||||||||||| |||||||    
T  14667199 aaaggccgagaaaggtatgagtt 14667221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 167 - 269
Target Start/End: Complemental strand, 14676727 - 14676625
Alignment:
Q  167 taatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaagggatgagttg 266  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14676727 taatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttg 14676628  T
Q  267 aaa 269  Q
    |||    
T  14676627 aaa 14676625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 155 - 257
Target Start/End: Original strand, 11872481 - 11872583
Alignment:
Q  155 aaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaa 254  Q
    ||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  11872481 aaaaaagtaatttaatatcgtgtgacccattgaaccacatatcatatattaaactgataagaacagatagtacacttgatcttagtcaaaaggccgagaa 11872580  T
Q  255 agg 257  Q
    |||    
T  11872581 agg 11872583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 177 - 256
Target Start/End: Complemental strand, 37422254 - 37422175
Alignment:
Q  177 tgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaag 256  Q
    |||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  37422254 tgatccgttggaccacatatcagatattaaactgataagaacatatgctacacttgatcttagccaaaaggccgagaaag 37422175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 190 - 266
Target Start/End: Complemental strand, 28698625 - 28698549
Alignment:
Q  190 cacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaagggatgagttg 266  Q
    ||||||||| |||||||| |||||| || | |||||||| ||||||||||||||||| |||||||| | ||||||||    
T  28698625 cacatatcaaatattaaattgataaaaatatatactacatttgatcttagccaaaagaccgagaaatgtatgagttg 28698549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 7448416 - 7448486
Alignment:
Q  144 ttctccccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataa 214  Q
    |||| ||| |||||||||||||| |||||||| | || |||| ||||||||||||||||||||||| ||||    
T  7448416 ttcttcccttcaaaaaagtaattcaatatcgtataattcatttgaccacatatcagatattaaactaataa 7448486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 209
Target Start/End: Complemental strand, 14703211 - 14703133
Alignment:
Q  131 ctactaagatgacttctccccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaact 209  Q
    |||||||  |||||| | ||||| |||||  |||||||||||||||||  | ||||| |||||||||| ||||||||||    
T  14703211 ctactaaagtgactttttcccctaaaaaatttaatttaatatcgtgtggactattggtccacatatcaaatattaaact 14703133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 54 - 354
Target Start/End: Original strand, 10795789 - 10796088
Alignment:
Q  54 aactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccct 153  Q
    ||||| |||||||||||||  |||| |||||||||||||||||||||  |||||||||||||||  ||| |||||||||| | |  || |||||||||||    
T  10795789 aactaaaattggtggggtgtacctaactcatgcaatagtgcaacgcacaagcgacacatgagaagcctaatagcaagctattgaagtggcttctccccct 10795888  T
Q  154 caaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 253  Q
    |||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10795889 caaaaaagtaatttaatatcgtgtgacccattgggtcacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 10795988  T
Q  254 aagggatgagttgaaagggtggctggcttctgcttttatatcaactgtctaatcagttcctttcttcattacccgatgtgggacttatatgcagtaccac 353  Q
    |||| ||||||||||||    |||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||    
T  10795989 aaggtatgagttgaaagaagagctggcttctgcttttatatcaactgtc-actcagtttctttcttcattacccgatgtgggacttatatgcagtaccac 10796087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 54 - 354
Target Start/End: Original strand, 10791551 - 10791850
Alignment:
Q  54 aactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccct 153  Q
    |||||||||||||||||||  |||| ||||||||||||||||||||| ||||||||||||||||  ||| |||||||||| | |  || |||||||||||    
T  10791551 aactagaattggtggggtgtacctaactcatgcaatagtgcaacgcacgagcgacacatgagaagcctaatagcaagctattgaagtggcttctccccct 10791650  T
Q  154 caaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 253  Q
    |||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10791651 caaaaaagtaatttaatatcatgtgacccattggatcacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 10791750  T
Q  254 aagggatgagttgaaagggtggctggcttctgcttttatatcaactgtctaatcagttcctttcttcattacccgatgtgggacttatatgcagtaccac 353  Q
    |||| ||||||||||||    | |||||||||||||||||||||||||| | | |||| |||||||||||||||||| ||||||||||||||||||||||    
T  10791751 aaggtatgagttgaaagaagagttggcttctgcttttatatcaactgtc-acttagtttctttcttcattacccgatatgggacttatatgcagtaccac 10791849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 80 - 219
Target Start/End: Complemental strand, 11333413 - 11333273
Alignment:
Q  80 ctcatgcaatagtgcaacgcatgagcgacacatgagaaa-tctagtagcaagctactaagatgacttctccccctcaaaaaagtaatttaatatcgtgtg 178  Q
    |||||||||||||||||||||||||||||| |||||||| || ||||| |||||||| || |||||||||||||||||||||||||||||||||||||||    
T  11333413 ctcatgcaatagtgcaacgcatgagcgacatatgagaaagtccagtagtaagctactgaggtgacttctccccctcaaaaaagtaatttaatatcgtgtg 11333314  T
Q  179 atccattggaccacatatcagatattaaactgataagaaca 219  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  11333313 atccgttggaccacatatcagatattaaactgataagaaca 11333273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 65 - 255
Target Start/End: Complemental strand, 8875887 - 8875696
Alignment:
Q  65 gtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccctcaaaaaagta- 163  Q
    |||||||||||   ||||||||| ||||||||||||||||||| ||||||||| || || ||||| |||  || |||  || || ||||||||||||||     
T  8875887 gtggggtgcgcaaggctcatgcactagtgcaacgcatgagcgatacatgagaagtccagcagcaaactatgaa-atggtttatctccctcaaaaaagtat 8875789  T
Q  164 -atttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaa 255  Q
     |||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||    
T  8875788 aatttaatatcgtgtaatctattggaccacatatcagatattaaattgataagaacagatattacacttgatcttagccaaaaggccgggaaa 8875696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 145 - 262
Target Start/End: Complemental strand, 30521359 - 30521242
Alignment:
Q  145 tctccccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaa 244  Q
    ||||||||||||||||  |||| ||||||||||||  |  ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  30521359 tctccccctcaaaaaataaattgaatatcgtgtgaggcgatggtccacatatcagatattaaactgataagaacagatactacacttgatctcagccaaa 30521260  T
Q  245 aggccgagaaagggatga 262  Q
    ||| ||||||||| ||||    
T  30521259 aggtcgagaaaggtatga 30521242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 64 - 209
Target Start/End: Complemental strand, 13136752 - 13136607
Alignment:
Q  64 ggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccctcaaaaaagta 163  Q
    ||||||||||||| | || |||| |||||||||||||| ||||||||| |||||    ||||||||||||||   ||| || ||||| ||||||||||||    
T  13136752 ggtggggtgcgccaaactaatgctatagtgcaacgcattagcgacacaagagaagcagagtagcaagctactgcaatggctcctccctctcaaaaaagta 13136653  T
Q  164 atttaatatcgtgtgatccattggaccacatatcagatattaaact 209  Q
    |||||||||||||||  ||||||| |||||||||||||||||||||    
T  13136652 atttaatatcgtgtggaccattggtccacatatcagatattaaact 13136607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 156 - 255
Target Start/End: Complemental strand, 21216131 - 21216032
Alignment:
Q  156 aaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaa 255  Q
    |||||||||||||||||  |||||| |||||  |||||||| |||||||||||||||||||| |||| ||| || ||||||||| |||||| || |||||    
T  21216131 aaaaagtaatttaatattttgtgattcattgagccacatataagatattaaactgataagaatagatgctatacatgatcttagtcaaaagaccaagaaa 21216032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 340 - 400
Target Start/End: Original strand, 10796110 - 10796170
Alignment:
Q  340 atatgcagtaccaccttgtgactggctcttacacacaactcccgtgcgtgactcaacactt 400  Q
    |||||||||| ||||||||||||| ||||||||||| |||||||||||||||||| |||||    
T  10796110 atatgcagtagcaccttgtgactgactcttacacaccactcccgtgcgtgactcaccactt 10796170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 135
Target Start/End: Complemental strand, 10509551 - 10509478
Alignment:
Q  62 ttggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctact 135  Q
    |||||||||||| || |||  |||| |||||||||||||| |||||||||  ||||  | ||||||||||||||    
T  10509551 ttggtggggtgctccaagccaatgctatagtgcaacgcattagcgacacacaagaagccgagtagcaagctact 10509478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 54 - 356
Target Start/End: Complemental strand, 7525176 - 7524875
Alignment:
Q  54 aactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccct 153  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||| | || ||||||||||||||  | | |||||||||    
T  7525176 aactaaaattggtggggtgcgcctagcccatgcaatagtgcaacgcatggacgacacatgagaaacccagcagcaagctactaaggcggcctctccccct 7525077  T
Q  154 caaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 253  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7525076 caaaaaagtaatttaatatcgtgtgatccattggatcacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 7524977  T
Q  254 aagggatgagttgaaagggtggctggcttctgcttttatatcaactgtctaatcagttcctttcttcattacccgatgtgggacttatatgcagtaccac 353  Q
    |||| |||| ||||||      || || | |||||||||||| |||||||| ||||||| |||||||||||||||||||||||||| ||||||| |||||    
T  7524976 aaggtatgacttgaaacaacaccttgcat-tgcttttatatccactgtctactcagttcttttcttcattacccgatgtgggacttttatgcagcaccac 7524878  T
Q  354 ctt 356  Q
    |||    
T  7524877 ctt 7524875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 50 - 295
Target Start/End: Complemental strand, 3643850 - 3643607
Alignment:
Q  50 attgaactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctcc 149  Q
    |||||||| |||||||||||||||||| |||  ||||||||||||||| ||| ||| ||||  |||||| | | |||||||||| |  |||   ||||||    
T  3643850 attgaact-gaattggtggggtgcgcc-agccaatgcaatagtgcaacacataagcaacactcgagaaacccaatagcaagctattgtgatagtttctcc 3643753  T
Q  150 ccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggcc 249  Q
    |||| ||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3643752 cccttaaaaaagtaatttaatatcgtgtgacccaatgggccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggcc 3643653  T
Q  250 gagaaagggatgagttgaaagggtggctggcttctgcttttatatc 295  Q
    |||||||| |||| || ||||   | || ||||||| |||||||||    
T  3643652 gagaaaggtatgaatttaaagtaagtctcgcttctgtttttatatc 3643607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 69 - 270
Target Start/End: Original strand, 1716370 - 1716567
Alignment:
Q  69 ggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccctcaaaaaagtaattta 168  Q
    |||||||| |||||||||||  ||||||| ||| ||| ||||   ||||||| ||||||||||||||    |||||||||||||| ||||||||||||||    
T  1716370 ggtgcgcc-agctcatgcaa--gtgcaacacataagcaacactcaagaaatcaagtagcaagctactcg--tgacttctcccccttaaaaaagtaattta 1716464  T
Q  169 atatcgtgtgatccatt-ggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaagggatgagttga 267  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |    
T  1716465 atatcgtgtgacccatttggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaa 1716564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 65 - 257
Target Start/End: Complemental strand, 4103440 - 4103250
Alignment:
Q  65 gtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccctcaaaaaagtaa 164  Q
    ||||| |||||| ||| ||| |||||||||||||||   ||||||  ||||||  | |||||||| |||||| |  |||| ||| |||| ||||||| ||    
T  4103440 gtgggatgcgcc-agcccatacaatagtgcaacgcaaaggcgacatttgagaacccaagtagcaaactactaggcggact-ctctccctaaaaaaagcaa 4103343  T
Q  165 tttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaagg 257  Q
    ||||||||||||||  | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||    
T  4103342 tttaatatcgtgtggactattgggccacatatcagatattaaactgataagaacagatactacacttgatcttaaccaaaatgctgagaaagg 4103250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 83 - 239
Target Start/End: Complemental strand, 16038036 - 16037881
Alignment:
Q  83 atgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccctcaaaaaagtaatttaatatcgtgtgatcc 182  Q
    ||||||||||||||| ||| ||||||||| |||||  | | |||||||||  |  |||||||| | ||| ||||||||||||||||||||||| ||| ||    
T  16038036 atgcaatagtgcaacacataagcgacacacgagaagcccattagcaagctcttgtgatgactttttcccttcaaaaaagtaatttaatatcgtttgaccc 16037937  T
Q  183 attggaccacatatcagatattaaactgataagaacagatactacacttgatcttag 239  Q
    ||| |||||| ||||| |||||||  | ||||||||| |||||||||||||||||||    
T  16037936 attagaccac-tatcaaatattaagataataagaacaaatactacacttgatcttag 16037881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 149 - 229
Target Start/End: Complemental strand, 5350752 - 5350672
Alignment:
Q  149 cccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacac 229  Q
    |||||||| |||  ||||||||||||||||  ||||||  |||||||||||||||||||||||||| || |||||||||||    
T  5350752 cccctcaagaaataaatttaatatcgtgtggaccattgtcccacatatcagatattaaactgataacaatagatactacac 5350672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 19261152 - 19261216
Alignment:
Q  191 acatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaa 255  Q
    |||||||||||||| ||| |||||||||| ||| ||||||||||||||  |||||||| ||||||    
T  19261152 acatatcagatatttaacggataagaacatatattacacttgatcttaatcaaaaggctgagaaa 19261216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 83 - 180
Target Start/End: Complemental strand, 33968654 - 33968558
Alignment:
Q  83 atgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccctcaaaaaagtaatttaatatcgtgtgat 180  Q
    |||||||||| |||||||| | | |||||  ||| ||||||||||||||||||| ||||   |||||||||  ||||||| ||||||||||| |||||    
T  33968654 atgcaatagttcaacgcataaacaacacacaagagatctagtagcaagctactatgatgttctctccccct-taaaaagttatttaatatcgcgtgat 33968558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 209
Target Start/End: Complemental strand, 13636429 - 13636365
Alignment:
Q  145 tctccccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaact 209  Q
    |||||||||||| ||  |||||||||| ||||||  || |||  |||||||||||||||||||||    
T  13636429 tctccccctcaagaacttaatttaataccgtgtggaccgttgatccacatatcagatattaaact 13636365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 50 - 362
Target Start/End: Complemental strand, 40054524 - 40054212
Alignment:
Q  50 attgaactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctcc 149  Q
    |||||||||| |||||||||||||||| |||| ||||||||||||||| ||| |||||||| | ||||  | | |||||||||| | |  || | |||||    
T  40054524 attgaactagtattggtggggtgcgccaagcttatgcaatagtgcaacacataagcgacacttaagaagcccaatagcaagctattgaagtggcctctcc 40054425  T
Q  150 ccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggcc 249  Q
    |||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40054424 ccctcaaaaaagtaatttaatatcgtatgacccattgggccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggcc 40054325  T
Q  250 gagaaagggatgagttgaaagggtggctggcttctgcttttatatcaactgtctaatcagttcctttcttcattacccgatgtgggacttatatgcagta 349  Q
    |||||||| |||| || ||| |  | || || ||| |||||||||| | |||||| |||||||||||||||||||  ||||||||||||| |||||||||    
T  40054324 gagaaaggtatgaattaaaatgaggcctcgcatcttcttttatatccagtgtctactcagttcctttcttcattattcgatgtgggacttttatgcagta 40054225  T
Q  350 ccaccttgtgact 362  Q
      |||||| ||||    
T  40054224 gtaccttgggact 40054212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 54 - 295
Target Start/End: Original strand, 41841052 - 41841292
Alignment:
Q  54 aactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccct 153  Q
    ||||| ||||| ||||||||||| ||| |||||||||||||||| |||  |||||||  |||||  | | |||||||||| |  | || ||||||||| |    
T  41841052 aactaaaattgatggggtgcgcc-agcccatgcaatagtgcaacacataggcgacactcgagaagcccaatagcaagctattggggtggcttctccccat 41841150  T
Q  154 caaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 253  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41841151 caaaaaagtaatttaatatcgtgtgacccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 41841250  T
Q  254 aagggatgagttgaaagggtggctggcttctgcttttatatc 295  Q
    |||| ||||||||||||   || |||||||||||||||||||    
T  41841251 aaggtatgagttgaaagatgggttggcttctgcttttatatc 41841292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 50 - 295
Target Start/End: Complemental strand, 44879194 - 44878950
Alignment:
Q  50 attgaactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctcc 149  Q
    |||||||||  |||||||||||||||| |||  ||||||||||||||||||| ||||||||   |||| |  | |||||||||| |  ||||||||||||    
T  44879194 attgaactaagattggtggggtgcgcc-agcctatgcaatagtgcaacgcataagcgacactcaagaagttcaatagcaagctattgtgatgacttctcc 44879096  T
Q  150 ccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggcc 249  Q
    |||||||||||||||||||||||| ||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44879095 ccctcaaaaaagtaatttaatatcatgtgacccattgagccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggcc 44878996  T
Q  250 gagaaagggatgagttgaaagggtggctggcttctgcttttatatc 295  Q
    |||||||| |||||||||| |   |||| || ||||||||||||||    
T  44878995 gagaaaggtatgagttgaatgttgggctcgcctctgcttttatatc 44878950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 50 - 295
Target Start/End: Original strand, 44880727 - 44880971
Alignment:
Q  50 attgaactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctcc 149  Q
    |||||||||  |||||||||||||||| |||  ||||||||||||||||||| ||||||||   |||| |  | |||||||||| |  ||||||||||||    
T  44880727 attgaactaagattggtggggtgcgcc-agcctatgcaatagtgcaacgcataagcgacactcaagaagttcaatagcaagctattgtgatgacttctcc 44880825  T
Q  150 ccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggcc 249  Q
    |||||||||||||||||||||||| ||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44880826 ccctcaaaaaagtaatttaatatcatgtgacccattgagccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggcc 44880925  T
Q  250 gagaaagggatgagttgaaagggtggctggcttctgcttttatatc 295  Q
    |||||||| |||||||||| |   |||| || ||||||||||||||    
T  44880926 gagaaaggtatgagttgaatgttgggctcgcctctgcttttatatc 44880971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 54 - 265
Target Start/End: Original strand, 10944298 - 10944509
Alignment:
Q  54 aactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccct 153  Q
    |||| |||||||||||||||||| | |  |||| |||||||||||||  || |||||   ||||  |||||||||||||||||| ||| ||||||||| |    
T  10944298 aacttgaattggtggggtgcgccaaaccaatgctatagtgcaacgcaatagtgacactcaagaagcctagtagcaagctactaaaatggcttctccccat 10944397  T
Q  154 caaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 253  Q
    |||||||||||||||||||||||||| ||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10944398 caaaaaagtaatttaatatcgtgtgaaccatttgtccacatataagatattaaactgataagaacagatactacacttgatcttagccaaaaggtcgaga 10944497  T
Q  254 aagggatgagtt 265  Q
    |||| |||||||    
T  10944498 aaggtatgagtt 10944509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 145 - 257
Target Start/End: Complemental strand, 37679872 - 37679760
Alignment:
Q  145 tctccccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaa 244  Q
    |||||||||||| |||  |||||||||||  |||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37679872 tctccccctcaataaataaatttaatatcaagtggaccattggcccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaa 37679773  T
Q  245 aggccgagaaagg 257  Q
    |||||||||||||    
T  37679772 aggccgagaaagg 37679760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 163 - 255
Target Start/End: Complemental strand, 37682156 - 37682064
Alignment:
Q  163 aatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaa 255  Q
    ||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37682156 aatttaatatcgtgtggaccattggcccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaa 37682064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 126 - 270
Target Start/End: Original strand, 42555053 - 42555198
Alignment:
Q  126 gcaagctactaagatgacttctccccctcaaaaaag-taatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatac 224  Q
    |||||||||| ||||| ||||| ||| ||||||||  ||||||||||||||||||| ||||| ||||||||||| ||||||||||||||| ||||||| |    
T  42555053 gcaagctactgagatggcttcttcccttcaaaaaacataatttaatatcgtgtgattcattgaaccacatatcaaatattaaactgataaaaacagattc 42555152  T
Q  225 tacacttgatcttagccaaaaggccgagaaagggatgagttgaaag 270  Q
    | ||||||||||||||||||||  | ||||||| ||||||||||||    
T  42555153 tgcacttgatcttagccaaaagatcaagaaaggtatgagttgaaag 42555198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 138 - 245
Target Start/End: Complemental strand, 44582977 - 44582870
Alignment:
Q  138 gatgacttctccccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatctt 237  Q
    ||||||||||| |||||||||||||||||||||||| |   ||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||    
T  44582977 gatgacttctctccctcaaaaaagtaatttaatatcatagaatccattgagctacatatcagatattaaactgataagaacagatactacacttgatctt 44582878  T
Q  238 agccaaaa 245  Q
    ||||||||    
T  44582877 agccaaaa 44582870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 189 - 295
Target Start/End: Original strand, 42220880 - 42220985
Alignment:
Q  189 ccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaagggatgagttgaaagggtggctggcttctgctt 288  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||| ||| | ||||||||||||    ||| || |||||||    
T  42220880 ccacatatcagatattaaactaataagaa-agatactacacttgatcttagccaaaagaccgaaaaatgtatgagttgaaagctatgctcgcctctgctt 42220978  T
Q  289 ttatatc 295  Q
    |||||||    
T  42220979 ttatatc 42220985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 82 - 202
Target Start/End: Original strand, 42554589 - 42554709
Alignment:
Q  82 catgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccctcaaaaaagtaatttaatatcgtgtgatc 181  Q
    |||||||||||||||||||   ||||||  ||||||    || ||||| ||||| ||||| |||||||||||||||||| |||||||||||||||| ||     
T  42554589 catgcaatagtgcaacgcaaaggcgacatttgagaagctcagaagcaaactactgagatggcttctccccctcaaaaaaataatttaatatcgtgtaatt 42554688  T
Q  182 cattggaccacatatcagata 202  Q
    |||||  ||||||||||||||    
T  42554689 cattgacccacatatcagata 42554709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 270
Target Start/End: Complemental strand, 42092094 - 42092013
Alignment:
Q  188 accacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaagggatgagttgaaag 270  Q
    |||||||||||||||||||||||||||||||| ||| ||||||| || |||| ||||||||  ||||||| ||||||| ||||    
T  42092094 accacatatcagatattaaactgataagaacaaatattacacttaattttag-caaaaggcaaagaaaggtatgagtttaaag 42092013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 42872514 - 42872564
Alignment:
Q  219 agatactacacttgatcttagccaaaaggccgagaaagggatgagttgaaa 269  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  42872514 agatactacacttaatcttagccaaaaggccgagaaaggtatgagttgaaa 42872564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 202
Target Start/End: Complemental strand, 11178062 - 11177945
Alignment:
Q  85 gcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccctcaaaaaagtaatttaatatcgtgtgatccat 184  Q
    |||||||||||||| || ||||||| |||||||  ||| || |||  || ||| ||| ||||||| |||||||| |||||||||||||| ||||| | ||    
T  11178062 gcaatagtgcaacgtataagcgacatatgagaagactaataacaaaatattaaaatggcttctcctcctcaaaagagtaatttaatatcatgtgacctat 11177963  T
Q  185 tggaccacatatcagata 202  Q
    || | |||||||| ||||    
T  11177962 tgaatcacatatctgata 11177945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 44583162 - 44583110
Alignment:
Q  156 aaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaact 209  Q
    |||||||||||||||||||||||  ||||| |  ||||||||||||||||||||    
T  44583162 aaaaagtaatttaatatcgtgtgtaccatt-gttcacatatcagatattaaact 44583110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 146; Significance: 8e-77; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 52 - 362
Target Start/End: Complemental strand, 43850259 - 43849952
Alignment:
Q  52 tgaactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctcccc 151  Q
    |||||||| |||||| ||||||||| |||  |||||||||||||||||||  ||||||||| |||| || | |||||||||| | |  |||| |||||||    
T  43850259 tgaactagtattggttgggtgcgccaagcctatgcaatagtgcaacgcataggcgacacattagaagtccaatagcaagctattgaagtgacctctcccc 43850160  T
Q  152 ctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccga 251  Q
    ||||||||||| |||||||||| |||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43850159 ctcaaaaaagtgatttaatatcatgtgactcattgggccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccga 43850060  T
Q  252 gaaagggatgagttgaaagggtggct-ggcttctgcttttatatcaactgtctaatcagttcctttcttcattacccgatgtgggacttatatgcagtac 350  Q
    |||||| |||||||||||    ||||  || ||||||||||||||  ||||||| |||| ||||||||| |||||||||||||||||   |||||||||     
T  43850059 gaaaggtatgagttgaaa-taaggctacgcatctgcttttatatcctctgtctactcagatcctttcttgattacccgatgtgggac---tatgcagtag 43849964  T
Q  351 caccttgtgact 362  Q
    ||||||| ||||    
T  43849963 caccttgggact 43849952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 53 - 268
Target Start/End: Complemental strand, 32918289 - 32918074
Alignment:
Q  53 gaactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccc 152  Q
    ||||||| ||||||| |||||||| | || |||| |||||||||||||| ||||||||| |||||    ||||||||||||||   ||| ||||||||||    
T  32918289 gaactaggattggtgaggtgcgccaaactaatgctatagtgcaacgcattagcgacacaagagaagcagagtagcaagctactgcaatggcttctccccc 32918190  T
Q  153 tcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgag 252  Q
    ||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32918189 tcaaaaaagtaatttaatatcgtgtggaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgag 32918090  T
Q  253 aaagggatgagttgaa 268  Q
    ||||| ||||||||||    
T  32918089 aaaggtatgagttgaa 32918074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 51 - 257
Target Start/End: Complemental strand, 30734199 - 30733993
Alignment:
Q  51 ttgaactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccc 150  Q
    ||||||| | |||||||||||||||| |||  ||||||||||||||||||   |||||||  |||||  |||||||||||||||||| ||| ||||||||    
T  30734199 ttgaacttggattggtggggtgcgccaagccaatgcaatagtgcaacgcactggcgacactcgagaagcctagtagcaagctactaaaatggcttctccc 30734100  T
Q  151 cctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccg 250  Q
    ||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30734099 cctaaaaaaagtaatttaatatcatgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccg 30734000  T
Q  251 agaaagg 257  Q
    |||||||    
T  30733999 agaaagg 30733993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 54 - 296
Target Start/End: Complemental strand, 30732216 - 30731974
Alignment:
Q  54 aactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccct 153  Q
    |||| ||||||||||||||| ||   |  |||| |||||||||| |||   | ||||| |||||  ||||||||||||||| ||  || | || ||||||    
T  30732216 aacttgaattggtggggtgcaccagaccaatgctatagtgcaacacattgacaacacacgagaagcctagtagcaagctaccaaagtggcctccccccct 30732117  T
Q  154 caaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 253  Q
    |||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30732116 caaaaaagtaatttaatatcgtgtgaaccattggtccacatattagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgaga 30732017  T
Q  254 aagggatgagttgaaagggtggctggcttctgcttttatatca 296  Q
    |||| ||||||||||||   |||| | | ||||||||||||||    
T  30732016 aaggtatgagttgaaagatgggctcgttgctgcttttatatca 30731974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 146 - 263
Target Start/End: Original strand, 2841008 - 2841125
Alignment:
Q  146 ctccccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaa 245  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2841008 ctccccctcaaaaaagtaatttaatatcgtgtgatccattgaaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaa 2841107  T
Q  246 ggccgagaaagggatgag 263  Q
    |||||||||||| |||||    
T  2841108 ggccgagaaaggtatgag 2841125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 51 - 270
Target Start/End: Complemental strand, 8973523 - 8973304
Alignment:
Q  51 ttgaactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccc 150  Q
    ||||||| |||||||||||| ||||| ||||||||||||||||||||||||  || |||| ||||||| | |  ||||||||| | | |||   ||||||    
T  8973523 ttgaacttgaattggtggggcgcgcc-agctcatgcaatagtgcaacgcatatgcaacacttgagaaacccaacagcaagctattgaaatggtctctccc 8973425  T
Q  151 cctcaaaaaagtaatttaatatcgt-gtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggcc 249  Q
    ||| |||||||||||||||||| || |||| ||||||| ||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8973424 ccttaaaaaagtaatttaatattgttgtgacccattgggccactaatcagatattaaactaataagaacagatactacacttgatcttagccaaaaggcc 8973325  T
Q  250 gagaaagggatgagttgaaag 270  Q
    |||||||| ||||||||||||    
T  8973324 gagaaaggtatgagttgaaag 8973304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 62 - 257
Target Start/End: Original strand, 19232307 - 19232501
Alignment:
Q  62 ttggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccctcaaaaaag 161  Q
    ||||||||||||||| |||| ||||||||||||||||||| || ||||| ||||||  | | |||||||||| | |  || ||||||||||||||||| |    
T  19232307 ttggtggggtgcgccaagcttatgcaatagtgcaacgcataagtgacacttgagaagcccaatagcaagctattgaagtggcttctccccctcaaaaagg 19232406  T
Q  162 taatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaagg 257  Q
    ||||||||||| |||||| ||| |||  |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  19232407 taatttaatattgtgtgacccaatgggtcacatatcag-tattaaactgataagaacagatattacacttgatcttagccaaaaggccgagaaagg 19232501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 50 - 265
Target Start/End: Complemental strand, 9008233 - 9008018
Alignment:
Q  50 attgaactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctcc 149  Q
    ||||||||||||||||||||||| ||| |||  |||||||||||||| ||||  ||||||| ||||||| | | || |||| || | | ||| | |||||    
T  9008233 attgaactagaattggtggggtgtgcc-agcgaatgcaatagtgcaaagcataggcgacacttgagaaacccaataacaagttattgaaatggcctctcc 9008135  T
Q  150 ccctcaaaaaagtaatttaatatcgtg-tgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggc 248  Q
    ||||||||||||||||||||||  ||  ||| ||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9008134 ccctcaaaaaagtaatttaatactgttatgacccattgggccactaatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggc 9008035  T
Q  249 cgagaaagggatgagtt 265  Q
    ||||||||| |||||||    
T  9008034 cgagaaaggtatgagtt 9008018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 51 - 270
Target Start/End: Complemental strand, 9026997 - 9026778
Alignment:
Q  51 ttgaactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccc 150  Q
    ||||||| ||||||| |||||| ||| |||  |||||||||||||| ||||  ||||||| ||||||| | | |||||||||| | | |||   ||||||    
T  9026997 ttgaacttgaattggaggggtgtgcc-agccaatgcaatagtgcaaagcataggcgacacttgagaaacccaatagcaagctattgaaatggtctctccc 9026899  T
Q  151 cctcaaaaaagtaatttaatatcgt-gtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggcc 249  Q
     ||||||||||||||||||||  || |||| ||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9026898 actcaaaaaagtaatttaatactgttgtgacccattgggccactaatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggcc 9026799  T
Q  250 gagaaagggatgagttgaaag 270  Q
    |||||||| ||||||||||||    
T  9026798 gagaaaggtatgagttgaaag 9026778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 51 - 270
Target Start/End: Complemental strand, 9021058 - 9020839
Alignment:
Q  51 ttgaactagaattggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccc 150  Q
    ||||||| ||||||||||||||| || | || ||||||||||||||| |||  | ||||| ||||||  | | ||||||| || | | ||| | |||| |    
T  9021058 ttgaacttgaattggtggggtgcaccaacct-atgcaatagtgcaacacataggtgacacttgagaagcccaatagcaagttattgaaatggcctctcac 9020960  T
Q  151 cctcaaaaaagtaatttaatatcgt-gtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggcc 249  Q
    |||||||||||||||||||||  || |||| ||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  9020959 cctcaaaaaagtaatttaatactgtagtgacccattgggccacatctcagatattaaattgataagaacagatactacacttgatcttagccaaaaggcc 9020860  T
Q  250 gagaaagggatgagttgaaag 270  Q
    |||||| | |||| |||||||    
T  9020859 gagaaatgtatgaattgaaag 9020839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 9030515 - 9030390
Alignment:
Q  145 tctccccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaa 244  Q
    |||||||||||||||||||||||||||  |||||| ||||||  |||| | ||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  9030515 tctccccctcaaaaaagtaatttaatactgtgtgacccattgagccacttctcaaatattaaattgataagaacagatactacacttgatcttagccaaa 9030416  T
Q  245 aggccgagaaagggatgagttgaaag 270  Q
    ||||| |||||   ||||||||||||    
T  9030415 aggccaagaaaaatatgagttgaaag 9030390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 189 - 270
Target Start/End: Complemental strand, 9032126 - 9032045
Alignment:
Q  189 ccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaagggatgagttgaaag 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  9032126 ccacatatcagatattaaactgataagaacagatactacacttgatcttaaccaaaaggccgagaaaggtatgagttgaaag 9032045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 181 - 270
Target Start/End: Complemental strand, 9023528 - 9023439
Alignment:
Q  181 ccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaagggatgagttgaaag 270  Q
    ||||||| ||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9023528 ccattgggccactaatcagatattaaactaataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaag 9023439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 195 - 270
Target Start/End: Complemental strand, 8979389 - 8979314
Alignment:
Q  195 atcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaagggatgagttgaaag 270  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8979389 atcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaag 8979314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 124 - 257
Target Start/End: Original strand, 6471679 - 6471810
Alignment:
Q  124 tagcaagctactaagatgacttctccccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagata 223  Q
    |||||| ||| || |||||||||| ||||| |||||||||| |||||||| ||||||||||| ||||  ||||||||||||||||| ||||||||| |||    
T  6471679 tagcaaactattatgatgacttcttcccct-aaaaaagtaacttaatatcatgtgatccattagaccgtatatcagatattaaactaataagaacatata 6471777  T
Q  224 ctacacttgatcttagccaaaaggccgagaaagg 257  Q
    |||||||| ||||||||||||||| ||| |||||    
T  6471778 ctacactt-atcttagccaaaaggtcgaaaaagg 6471810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 155 - 255
Target Start/End: Original strand, 10763878 - 10763978
Alignment:
Q  155 aaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaa 254  Q
    |||||||||||||||||| || ||  ||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||    
T  10763878 aaaaaagtaatttaatattgtatggaccattgatccacatatcagatattaaactgataagaacatatactacacttgatcttagtcaaaagaccgagaa 10763977  T
Q  255 a 255  Q
    |    
T  10763978 a 10763978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 83 - 234
Target Start/End: Original strand, 17225591 - 17225743
Alignment:
Q  83 atgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccctcaaaaaagtaatttaatatcgtgtgatcc 182  Q
    ||||||||||||||||||| ||||| | ||||||| || |  |  || ||||  |||||| |||||| ||||||||||||||||||||||||| |||| |    
T  17225591 atgcaatagtgcaacgcataagcgaaatatgagaagtccaacaataaactacatagatgatttctcctcctcaaaaaagtaatttaatatcgtatgattc 17225690  T
Q  183 attggaccacatatcagatattaaactgat-aagaacagatactacacttgat 234  Q
    ||||||||| ||||||| |||||||| ||| || |||||||||||||||||||    
T  17225691 attggaccagatatcagttattaaaccgataaaaaacagatactacacttgat 17225743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 149 - 270
Target Start/End: Complemental strand, 8992262 - 8992140
Alignment:
Q  149 cccctcaaaaaagtaatttaatatcgt-gtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaagg 247  Q
    ||||||||||||||||||||||||  | |||| ||||||| ||||  |||||||||| |||| ||||||||| ||||||||||||||||||||||||||     
T  8992262 cccctcaaaaaagtaatttaatattattgtgacccattgggccactaatcagatattgaactcataagaacatatactacacttgatcttagccaaaaga 8992163  T
Q  248 ccgagaaagggatgagttgaaag 270  Q
    | |||||||| ||||||| ||||    
T  8992162 ctgagaaaggcatgagttaaaag 8992140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 9016614 - 9016485
Alignment:
Q  145 tctccccctcaaaaaagtaatttaatatcgt-gtgatccattggaccacatatcagatattaaact---gataagaacagatactacacttgatcttagc 240  Q
    |||||||||||||||||||||||||||  || |||| ||||||| ||||  |||||||||||||||   ||||||||||||||||||| |||||||||||    
T  9016614 tctccccctcaaaaaagtaatttaatactgttgtgacccattgggccactaatcagatattaaactactgataagaacagatactacatttgatcttagc 9016515  T
Q  241 caaaaggccgagaaagggatgagttgaaag 270  Q
    ||||||| |||  |||| ||||||| ||||    
T  9016514 caaaaggtcgaataaggtatgagttaaaag 9016485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 195 - 269
Target Start/End: Complemental strand, 8984760 - 8984686
Alignment:
Q  195 atcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaagggatgagttgaaa 269  Q
    |||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  8984760 atcaaatattaaactaataagaacaaatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaa 8984686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 82 - 213
Target Start/End: Complemental strand, 8913116 - 8912983
Alignment:
Q  82 catgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccctcaaaaaagtaatttaatatc--gtgtga 179  Q
    ||||||||||||||| ||||  |||||| ||||| || | | |||||||||||| | |||   |||||||||||||||||||||||||||||  ||||||    
T  8913116 catgcaatagtgcaatgcataggcgacaaatgaggaaaccaatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcatgtgtga 8913017  T
Q  180 tccattggaccacatatcagatattaaactgata 213  Q
    | ||||||||||||||| | |||||||| |||||    
T  8913016 ttcattggaccacatattatatattaaaatgata 8912983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 8988573 - 8988447
Alignment:
Q  145 tctccccctcaaaaaagtaatttaatatcgt-gtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaa 243  Q
    |||| ||||||||||||||||||||||| || | || ||||||   |||  |||| |||||||||||||||||||| ||||||||||||||||| |||||    
T  8988573 tctcaccctcaaaaaagtaatttaatattgttgagaaccattgagtcactgatcaaatattaaactgataagaacaaatactacacttgatcttcgccaa 8988474  T
Q  244 aaggccgagaaagggatgagttgaaag 270  Q
    |||||| |||| || || |||||||||    
T  8988473 aaggccaagaatggtataagttgaaag 8988447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 145 - 231
Target Start/End: Complemental strand, 17275948 - 17275862
Alignment:
Q  145 tctccccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacactt 231  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||| | | ||| |||||||||||||  |||||||||||    
T  17275948 tctccccctcaaaaatgtaattcaatatcgtgtgatccattggaccacatattaaagattgaactgataagaacgtatactacactt 17275862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 146 - 245
Target Start/End: Complemental strand, 35702005 - 35701906
Alignment:
Q  146 ctccccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaa 245  Q
    |||||||||||||||||||  |||||||||||||    |||| |||||||||| |||||||||| |||| |||| |||| ||||||||||||||||||||    
T  35702005 ctccccctcaaaaaagtaaactaatatcgtgtgacttgttggcccacatatcaaatattaaactaataaaaacaaataccacacttgatcttagccaaaa 35701906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 257
Target Start/End: Complemental strand, 39814150 - 39814117
Alignment:
Q  224 ctacacttgatcttagccaaaaggccgagaaagg 257  Q
    |||||||||||| |||||||||||||||||||||    
T  39814150 ctacacttgatcatagccaaaaggccgagaaagg 39814117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 31659782 - 31659818
Alignment:
Q  150 ccctcaaaaaagtaatttaatatcgtgtgatccattg 186  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  31659782 cccttaaaaaagtaatttaatatcgtatgatccattg 31659818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 6e-47; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 79 - 262
Target Start/End: Complemental strand, 27134694 - 27134511
Alignment:
Q  79 gctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagctactaagatgacttctccccctcaaaaaagtaatttaatatcgtgtg 178  Q
    |||||||||||||||||||||||||||||||||||||||  | |  ||||| ||| | || || ||||||||||||||||||||||||||||||||| ||    
T  27134694 gctcatgcaatagtgcaacgcatgagcgacacatgagaagcccaacagcaaactattgaggtgtcttctccccctcaaaaaagtaatttaatatcgtttg 27134595  T
Q  179 atccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaagggatga 262  Q
    |  |||| ||||||||||||||||||||||  |||||||||||||||| | ||||||||||  |||||||||| ||||| ||||    
T  27134594 actcattagaccacatatcagatattaaaccaataagaacagatactagatttgatcttagtgaaaaggccgaaaaaggtatga 27134511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 145 - 256
Target Start/End: Complemental strand, 8128259 - 8128149
Alignment:
Q  145 tctccccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaa 244  Q
    |||||||||||| |||  |||||||||| |||||| ||||||| |||||||||| |||||||||| | ||||||| ||||||||||| |||||| |||||    
T  8128259 tctccccctcaagaaataaatttaatattgtgtga-ccattggcccacatatcatatattaaactaaaaagaacatatactacacttaatcttaaccaaa 8128161  T
Q  245 aggccgagaaag 256  Q
    ||  ||||||||    
T  8128160 agaacgagaaag 8128149  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 132
Target Start/End: Complemental strand, 22079714 - 22079645
Alignment:
Q  63 tggtggggtgcgcctagctcatgcaatagtgcaacgcatgagcgacacatgagaaatctagtagcaagct 132  Q
    |||||||||||||  |||  ||||||||||||||||||| ||||||| | ||||| || | |||||||||    
T  22079714 tggtggggtgcgcaaagcctatgcaatagtgcaacgcataagcgacaaacgagaagtccaatagcaagct 22079645  T

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Target: scaffold0549 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 145 - 211
Target Start/End: Complemental strand, 5513 - 5447
Alignment:
Q  145 tctccccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactga 211  Q
    ||||| ||||||||||  ||||||||||||||||| | ||||| ||| |||||||||||||||||||    
T  5513 tctccacctcaaaaaataaatttaatatcgtgtgaacaattggcccatatatcagatattaaactga 5447  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 257
Target Start/End: Original strand, 15758562 - 15758605
Alignment:
Q  214 agaacagatactacacttgatcttagccaaaaggccgagaaagg 257  Q
    |||||||||| |||||||||||||||||||||||| ||||||||    
T  15758562 agaacagatattacacttgatcttagccaaaaggctgagaaagg 15758605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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