View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21319_low_15 (Length: 385)

Name: NF21319_low_15
Description: NF21319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21319_low_15
NF21319_low_15
[»] chr3 (5 HSPs)
chr3 (31-374)||(12110245-12110588)
chr3 (31-374)||(12128080-12128422)
chr3 (90-374)||(12123916-12124218)
chr3 (31-76)||(12124211-12124256)
chr3 (302-374)||(30056020-30056091)
[»] chr5 (6 HSPs)
chr5 (39-203)||(26834885-26835063)
chr5 (62-150)||(26792492-26792580)
chr5 (175-235)||(26792274-26792334)
chr5 (95-136)||(26729842-26729883)
chr5 (88-136)||(26745925-26745973)
chr5 (166-205)||(26729729-26729768)
[»] scaffold0759 (2 HSPs)
scaffold0759 (39-199)||(2565-2736)
scaffold0759 (175-235)||(2441-2501)
[»] scaffold0093 (1 HSPs)
scaffold0093 (68-216)||(21218-21381)
[»] scaffold0416 (2 HSPs)
scaffold0416 (39-131)||(6498-6589)
scaffold0416 (175-235)||(7294-7354)
[»] scaffold0112 (3 HSPs)
scaffold0112 (68-136)||(17099-17167)
scaffold0112 (175-235)||(40835-40895)
scaffold0112 (170-240)||(25775-25845)
[»] chr8 (2 HSPs)
chr8 (303-375)||(7941555-7941626)
chr8 (303-375)||(7947106-7947177)
[»] chr6 (1 HSPs)
chr6 (302-375)||(6802988-6803060)


Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 31 - 374
Target Start/End: Complemental strand, 12110588 - 12110245
Alignment:
Q  31 attacaataccacacccatgcacatgcatttttt-atcaaaatccaaacggatattcaagaaatccaattgatcaattggaaacaaaggttgttttattt 129  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  12110588 attacaataccacacccatgcacatgcatttttttatcaaaatccaaacggatattcaagaaatccaattgataaattggaaacaaaggttgttttattt 12110489  T
Q  130 aaagtagttcatgcatgataatgcagggttggttttagacatatcattcttaagtggcaatttccaaagccatcttaaggtagtcttgttctttagattt 229  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12110488 aaagtagtacatgcatgataatgcatggttggttttagacatatcattcttaagtggcaatttccaaagccatcttaaggtagtcttgttctttagattt 12110389  T
Q  230 agaggcaatcttgaacaaactttttactgcagtgtttgatccaattttgaagtaccgttctgcttcgactacagaggcaaaacaccacccatattcgaca 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  12110388 agaggcaatcttgaacaaactttttactgcagtgtttgatccaattttgaagtaccgttctgcttcggctacagaggcaaaacaccacccatattcgaca 12110289  T
Q  330 tcagcattaagcataacgagcacaaaagttcccacttcccttctt 374  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  12110288 tcagcatt-agcataacgagcacaaaagttcccacttcccttctt 12110245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 31 - 374
Target Start/End: Complemental strand, 12128422 - 12128080
Alignment:
Q  31 attacaataccacacccatgcacatgcattttttatcaaaatccaaacggatattcaagaaatccaattgatcaattggaaacaaaggttgttttattta 130  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12128422 attacaataccatacccatgcacatgcattttttatcaaaatccaaacggatattcaagaaatccaattgatcaattggaaacaaaggttgttttattta 12128323  T
Q  131 aagtagttcatgcatgataatgcagggttggttttagacatatcattcttaagtggcaatttccaaagccatcttaaggtagtcttgttctttagattta 230  Q
    |||||||  |||||||||||||||  |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12128322 aagtagtatatgcatgataatgcatagttggttttatacatatcattcttaagttgcaatttccaaagccatcttaaggtagtcttgttctttagattta 12128223  T
Q  231 gaggcaatcttgaacaaactttttactgcagtgtttgatccaattttgaagtaccgttctgcttcgactacagaggcaaaacaccacccatattcgacat 330  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| | || |||||||||||||| |||||||||| ||    
T  12128222 gaggcaatcttgaacaaattttttactgcagtgtttgatccaattttgaagtatcgttctgcttcggcgactgaggcaaaacaccatccatattcgatat 12128123  T
Q  331 cagcattaagcataacgagcacaaaagttcccacttcccttctt 374  Q
    || |||| ||||||||||||||||||||| ||||||||||||||    
T  12128122 catcatt-agcataacgagcacaaaagtttccacttcccttctt 12128080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 90 - 374
Target Start/End: Complemental strand, 12124218 - 12123916
Alignment:
Q  90 aaatccaattgatcaattggaaacaaaggttgttttatttaaagtagttcat--gcatgataatgcagggttggttttagacatatcattcttaagtggc 187  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| |||  ||||||||||||| ||||||||||||||||||||||||||||||||    
T  12124218 aaatccaatcgatcaattggaaacaaaggttgttttatttaaagtagtacatatgcatgataatgcatggttggttttagacatatcattcttaagtggc 12124119  T
Q  188 aatttccaaagccatcttaaggtagtcttgttctttagatttagaggcaatct-----------------tgaacaaactttttactgcagtgtttgatc 270  Q
    ||||||||||||||||||||||||| ||| |||||| || |||||||||||||                 |||| |||||||||||||||||||||||||    
T  12124118 aatttccaaagccatcttaaggtagcctttttctttggagttagaggcaatcttgaaaaaactgcaatcttgaaaaaactttttactgcagtgtttgatc 12124019  T
Q  271 caattttgaagtaccgttctgcttcgactacagaggcaaaacaccacccatattcgacatcagcattaagcataacgagcacaaaagttcccacttccct 370  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||| ||||||||| ||||||||| ||||||||||| ||||||||||    
T  12124018 caattttgaagtactgttctgcttcggctacagaggcaaaacaccatccatattcgatatcagcatt-agcataacgggcacaaaagtttccacttccct 12123920  T
Q  371 tctt 374  Q
    ||||    
T  12123919 tctt 12123916  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 12124256 - 12124211
Alignment:
Q  31 attacaataccacacccatgcacatgcattttttatcaaaatccaa 76  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||    
T  12124256 attacaataccacaccaatgcagatgcattttttatcaaaatccaa 12124211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 302 - 374
Target Start/End: Original strand, 30056020 - 30056091
Alignment:
Q  302 agaggcaaaacaccacccatattcgacatcagcattaagcataacgagcacaaaagttcccacttcccttctt 374  Q
    ||||||||||||||| ||||||| || ||||| |||| ||| ||||||||||||| |||||||| ||||||||    
T  30056020 agaggcaaaacaccagccatatttgatatcagaatta-gcaaaacgagcacaaaaattcccactacccttctt 30056091  T

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Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 39 - 203
Target Start/End: Complemental strand, 26835063 - 26834885
Alignment:
Q  39 accacacccatgcacatgcattttttatcaaaatccaaacggatattcaagaaatccaattgatcaattggaaacaaaggttgttttatttaaagtagtt 138  Q
    |||||||||||| ||||||||  ||||| |||||||| ||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||| |     
T  26835063 accacacccatgtacatgcatcatttattaaaatccagacggatatcaaagaaatacaattgatcaattggaaacaaaggttgttttatttaaagtatta 26834964  T
Q  139 catgcatgata--atgcagggttggtttt---------agaca---tatcattcttaagtggcaatttccaaagccatc 203  Q
     | ||||||||  || || ||||||||||         |||||   |||||||||||||||||||||||||||||||||    
T  26834963 aaagcatgataacatacatggttggtttttagtttttgagacatattatcattcttaagtggcaatttccaaagccatc 26834885  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 62 - 150
Target Start/End: Complemental strand, 26792580 - 26792492
Alignment:
Q  62 tttatcaaaatccaaacggatattcaagaaatccaattgatcaattggaaacaaaggttgttttatttaaagtagttcatgcatgataa 150  Q
    ||||| |||||||| ||||||||  ||||||| |||||||| ||| ||||| ||||||||||||||||||||||||  |||||||||||    
T  26792580 tttattaaaatccagacggatatcaaagaaatacaattgatgaataggaaataaaggttgttttatttaaagtagtagatgcatgataa 26792492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 26792334 - 26792274
Alignment:
Q  175 attcttaagtggcaatttccaaagccatcttaaggtagtcttgttctttagatttagaggc 235  Q
    ||||||||||||||||||||||||||||||| | ||||| || ||| ||||| ||||||||    
T  26792334 attcttaagtggcaatttccaaagccatcttcaagtagtttttttcattagagttagaggc 26792274  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 26729883 - 26729842
Alignment:
Q  95 caattgatcaattggaaacaaaggttgttttatttaaagtag 136  Q
    ||||||||| ||||||||||||||||| ||||||||||||||    
T  26729883 caattgatcgattggaaacaaaggttgctttatttaaagtag 26729842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 26745973 - 26745925
Alignment:
Q  88 agaaatccaattgatcaattggaaacaaaggttgttttatttaaagtag 136  Q
    |||||| ||||| ||||||| ||||||||||||| ||||||||||||||    
T  26745973 agaaatacaattcatcaattagaaacaaaggttgctttatttaaagtag 26745925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 166 - 205
Target Start/End: Complemental strand, 26729768 - 26729729
Alignment:
Q  166 agacatatcattcttaagtggcaatttccaaagccatctt 205  Q
    |||||||||||||||||||| |||||||||||||| ||||    
T  26729768 agacatatcattcttaagtgacaatttccaaagccgtctt 26729729  T

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Target: scaffold0759 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: scaffold0759
Description:

Target: scaffold0759; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 39 - 199
Target Start/End: Complemental strand, 2736 - 2565
Alignment:
Q  39 accacacccatgcacatgcattttttatcaaaatccaaacggatattcaagaaatccaattgatcaattggaaacaaaggttgttttatttaaagtagtt 138  Q
    |||||||||||| ||| ||||  ||||| |||||||| ||||||||  ||||||| |||||||||||| ||||| ||||||||||||||||||||||||     
T  2736 accacacccatgtacaagcatcatttattaaaatccagacggatatcaaagaaatacaattgatcaataggaaataaaggttgttttatttaaagtagta 2637  T
Q  139 catgcatgata--atgcagggttggtttt---------agacatatcattcttaagtggcaatttccaaagc 199  Q
     ||||||||||  ||||| ||||||||||         ||||||||||||||||||| | ||||||||||||    
T  2636 gatgcatgataacatgcatggttggtttttagtttttgagacatatcattcttaagtagaaatttccaaagc 2565  T

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Target: scaffold0759; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 2501 - 2441
Alignment:
Q  175 attcttaagtggcaatttccaaagccatcttaaggtagtcttgttctttagatttagaggc 235  Q
    ||||||||||||||||||||||||||||||| | ||||| || ||| ||||| ||||||||    
T  2501 attcttaagtggcaatttccaaagccatcttcaagtagtttttttcattagagttagaggc 2441  T

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Target: scaffold0093 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 68 - 216
Target Start/End: Complemental strand, 21381 - 21218
Alignment:
Q  68 aaaatccaaacggatattcaagaaatccaattgatcaattggaaacaaaggttgttttatttaaagtag----ttcatgcatgata--atgcagggttgg 161  Q
    |||||||| || |||||  ||||||| |||||||||||||| |||||||||||||||||||||||||||    | |||||||||||  ||||| ||||||    
T  21381 aaaatccagacagatatcgaagaaatacaattgatcaattgaaaacaaaggttgttttatttaaagtagtagatgcatgcatgataacatgcatggttgg 21282  T
Q  162 tttt---------agacatatcattcttaagtggcaatttccaaagccatcttaaggtagtctt 216  Q
    ||||         |||||||| ||||||||||||||||||||||||||||| | | ||||||||    
T  21281 tttttagtttttgagacatataattcttaagtggcaatttccaaagccatcctcaagtagtctt 21218  T

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Target: scaffold0416 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0416
Description:

Target: scaffold0416; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 39 - 131
Target Start/End: Original strand, 6498 - 6589
Alignment:
Q  39 accacacccatgcacatgcattttttatcaaaatccaaacggatattcaagaaatccaattgatcaattggaaacaaaggttgttttatttaa 131  Q
    |||||||||||||||||||||  ||||| |||||||| ||||||||  ||||||| ||||||||||||| ||||| |||||||||||||||||    
T  6498 accacacccatgcacatgcatcatttattaaaatccagacggatatcgaagaaatacaattgatcaattagaaac-aaggttgttttatttaa 6589  T

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Target: scaffold0416; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 7294 - 7354
Alignment:
Q  175 attcttaagtggcaatttccaaagccatcttaaggtagtcttgttctttagatttagaggc 235  Q
    ||||||||||||||||||||||||||||||| | |||||||| ||| ||||| ||||||||    
T  7294 attcttaagtggcaatttccaaagccatcttcaagtagtctttttcattagagttagaggc 7354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 68 - 136
Target Start/End: Original strand, 17099 - 17167
Alignment:
Q  68 aaaatccaaacggatattcaagaaatccaattgatcaattggaaacaaaggttgttttatttaaagtag 136  Q
    |||||||| ||||||||  ||||||| |||||||||||||| ||||||| |||||||||||||||||||    
T  17099 aaaatccagacggatatcgaagaaatacaattgatcaattgaaaacaaaagttgttttatttaaagtag 17167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 40835 - 40895
Alignment:
Q  175 attcttaagtggcaatttccaaagccatcttaaggtagtcttgttctttagatttagaggc 235  Q
    ||||||||||||||||||||||||||||||| | |||||||| ||| ||||| ||||||||    
T  40835 attcttaagtggcaatttccaaagccatcttcaagtagtctttttcattagagttagaggc 40895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 240
Target Start/End: Original strand, 25775 - 25845
Alignment:
Q  170 atatcattcttaagtggcaatttccaaagccatcttaaggtagtcttgttctttagatttagaggcaatct 240  Q
    ||||||||||||||| ||||| |||||||||||||| | ||| || | ||| ||||| |||||||| ||||    
T  25775 atatcattcttaagtagcaatatccaaagccatcttcaagtactccttttcattagagttagaggccatct 25845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 375
Target Start/End: Complemental strand, 7941626 - 7941555
Alignment:
Q  303 gaggcaaaacaccacccatattcgacatcagcattaagcataacgagcacaaaagttcccacttcccttcttc 375  Q
    |||| ||||||||| |||||||||| ||||| |||| | |||||||||||||||| | |||||||| ||||||    
T  7941626 gaggaaaaacaccatccatattcgatatcaggattagg-ataacgagcacaaaagctaccacttcctttcttc 7941555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 375
Target Start/End: Complemental strand, 7947177 - 7947106
Alignment:
Q  303 gaggcaaaacaccacccatattcgacatcagcattaagcataacgagcacaaaagttcccacttcccttcttc 375  Q
    |||| ||||||||| ||||||| || ||||| |||| | |||||||||||||||| | |||||||| ||||||    
T  7947177 gaggaaaaacaccatccatatttgatatcaggattagg-ataacgagcacaaaagctaccacttcctttcttc 7947106  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 375
Target Start/End: Original strand, 6802988 - 6803060
Alignment:
Q  302 agaggcaaaacaccacccatattcgacatcagcattaagcataacgagcacaaaagttcccacttcccttcttc 375  Q
    ||||||||||||||| |||||||||| ||||  ||| || ||||||||| |||||  |||||||||| ||||||    
T  6802988 agaggcaaaacaccatccatattcgatatcaagatt-aggataacgagcgcaaaaactcccacttcctttcttc 6803060  T

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