View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21319_low_16 (Length: 373)

Name: NF21319_low_16
Description: NF21319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21319_low_16
NF21319_low_16
[»] chr6 (6 HSPs)
chr6 (18-328)||(6626200-6626499)
chr6 (47-142)||(6626600-6626695)
chr6 (128-162)||(6626517-6626551)
chr6 (220-265)||(7470758-7470803)
chr6 (219-268)||(17382074-17382123)
chr6 (195-267)||(29283806-29283878)
[»] chr1 (5 HSPs)
chr1 (199-260)||(51031873-51031934)
chr1 (187-248)||(17669655-17669716)
chr1 (120-168)||(8797084-8797132)
chr1 (187-263)||(16033440-16033516)
chr1 (225-265)||(24506941-24506981)
[»] chr4 (3 HSPs)
chr4 (199-268)||(11949665-11949734)
chr4 (220-263)||(27372382-27372425)
chr4 (187-252)||(39093565-39093630)
[»] scaffold0045 (2 HSPs)
scaffold0045 (199-263)||(63857-63921)
scaffold0045 (199-263)||(71189-71253)
[»] chr8 (3 HSPs)
chr8 (219-263)||(42200684-42200728)
chr8 (188-263)||(35061631-35061706)
chr8 (199-263)||(8137930-8137994)
[»] chr7 (4 HSPs)
chr7 (188-264)||(17883882-17883958)
chr7 (199-263)||(5526720-5526784)
chr7 (215-255)||(42753445-42753485)
chr7 (229-265)||(49172317-49172353)
[»] chr5 (7 HSPs)
chr5 (187-263)||(20175720-20175796)
chr5 (199-263)||(28344549-28344613)
chr5 (186-263)||(6489002-6489079)
chr5 (217-263)||(14232860-14232908)
chr5 (219-272)||(17064886-17064939)
chr5 (219-255)||(34860168-34860204)
chr5 (219-263)||(40715971-40716015)
[»] chr3 (3 HSPs)
chr3 (215-267)||(31316628-31316680)
chr3 (219-260)||(21549036-21549077)
chr3 (219-268)||(29687072-29687121)
[»] chr2 (5 HSPs)
chr2 (215-261)||(1238159-1238205)
chr2 (218-263)||(23983999-23984044)
chr2 (199-268)||(30836301-30836370)
chr2 (219-263)||(27244652-27244696)
chr2 (200-255)||(34242825-34242881)


Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-115; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 6626499 - 6626200
Alignment:
Q  18 gaaggaaggatcaatactaattattggtaatgaggaatgatcaagtagcataatgagaagtaatatcacaaaattgaatcagaaaaggaaaatgttttaa 117  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6626499 gaaggaaggatcaatactaattattggttatgaggaatgatcaagtagcataatgagaagtaatatcacaaaattgaatcagaaaaggaaaatgttttaa 6626400  T
Q  118 ctaatttatattgtttgagatttttaactaatttatggatcaatatcaattcttggtaatannnnnnnggtggtagccggagtttgaacccaaaattttg 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||        ||||||||||||||||||| || ||||||||    
T  6626399 ctaatttatattgtttgagatttttaactaatttatggatcaatatcaattcttggtattattttttttgtggtagccggagtttgaatccgaaattttg 6626300  T
Q  218 tatataatatacattgtccctatcaattgagctaagcttacgaggataaattcttggtaatgttttatatgcaatgaaactgtcataattggtaattaaa 317  Q
    |||||||||| |||||| ||| ||||||||| ||||||  ||         |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6626299 tatataatatgcattgttcctgtcaattgagttaagct--cg---------tcttggtaatgttttatatgcaatgaaactgtcataattggtaattaaa 6626211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 47 - 142
Target Start/End: Complemental strand, 6626695 - 6626600
Alignment:
Q  47 atgaggaatgatcaagtagcataatgagaagtaatatcacaaaattgaatcagaaaaggaaaatgttttaactaatttatattgtttgagattttt 142  Q
    ||||| ||| ||||||||||||||||||||  |||||||||||| ||||| |||||| | |||||||| ||||||||||||| ||||||| |||||    
T  6626695 atgagaaattatcaagtagcataatgagaatgaatatcacaaaaatgaatgagaaaaaggaaatgtttgaactaatttatatcgtttgagtttttt 6626600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 162
Target Start/End: Complemental strand, 6626551 - 6626517
Alignment:
Q  128 ttgtttgagatttttaactaatttatggatcaata 162  Q
    ||||||||||||| |||||||||||||||||||||    
T  6626551 ttgtttgagatttctaactaatttatggatcaata 6626517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 265
Target Start/End: Original strand, 7470758 - 7470803
Alignment:
Q  220 tataatatacattgtccctatcaattgagctaagcttacgaggata 265  Q
    |||||||| |||| |||||| ||| |||||||||||||||||||||    
T  7470758 tataatatgcattatccctaccaactgagctaagcttacgaggata 7470803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 17382123 - 17382074
Alignment:
Q  219 atataatatacattgtccctatcaattgagctaagcttacgaggataaat 268  Q
    ||||| |||||||||||| || ||| ||||||||||| ||||||||||||    
T  17382123 atatattatacattgtccataccaactgagctaagctcacgaggataaat 17382074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 267
Target Start/End: Complemental strand, 29283878 - 29283806
Alignment:
Q  195 cggagtttgaacccaaaattttgtatataatatacattgtccctatcaattgagctaagcttacgaggataaa 267  Q
    |||||||||||||| | |  ||| ||||| ||||||||||| ||| ||| |||| |||||||||||| |||||    
T  29283878 cggagtttgaaccctagaccttgcatatattatacattgtctctaccaactgagttaagcttacgagcataaa 29283806  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 199 - 260
Target Start/End: Complemental strand, 51031934 - 51031873
Alignment:
Q  199 gtttgaacccaaaattttgtatataatatacattgtccctatcaattgagctaagcttacga 260  Q
    |||||||||| | |||||||||||||||| ||||||| ||||||||||||||||| ||||||    
T  51031934 gtttgaaccctagattttgtatataatatgcattgtcactatcaattgagctaagtttacga 51031873  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 17669716 - 17669655
Alignment:
Q  187 gtggtagccggagtttgaacccaaaattttgtatataatatacattgtccctatcaattgag 248  Q
    ||||| ||||||||||||||||  ||  ||| ||||| ||||||||||||||||||| ||||    
T  17669716 gtggtggccggagtttgaaccccgaaccttgcatatattatacattgtccctatcaactgag 17669655  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 8797084 - 8797132
Alignment:
Q  120 aatttatattgtttgagatttttaactaatttatggatcaatatcaatt 168  Q
    ||||||||||||||||| |||||||| |||||  |||||||||| ||||    
T  8797084 aatttatattgtttgaggtttttaaccaattttgggatcaatataaatt 8797132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 263
Target Start/End: Original strand, 16033440 - 16033516
Alignment:
Q  187 gtggtagccggagtttgaacccaaaattttgtatataatatacattgtccctatcaattgagctaagcttacgagga 263  Q
    ||||| |||||||||||||||| | |  ||| ||||| ||| ||||||||||||||| ||||  ||||| |||||||    
T  16033440 gtggtggccggagtttgaaccccagaccttgcatatattatgcattgtccctatcaactgagtcaagctcacgagga 16033516  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 265
Target Start/End: Original strand, 24506941 - 24506981
Alignment:
Q  225 tatacattgtccctatcaattgagctaagcttacgaggata 265  Q
    |||||||||||  |||||| |||||||||||||||||||||    
T  24506941 tatacattgtctatatcaactgagctaagcttacgaggata 24506981  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 199 - 268
Target Start/End: Original strand, 11949665 - 11949734
Alignment:
Q  199 gtttgaacccaaaattttgtatataatatacattgtccctatcaattgagctaagcttacgaggataaat 268  Q
    ||||||||||  ||||||||||||| |||  ||||| | |||||| ||||||||||| ||||||||||||    
T  11949665 gtttgaaccccgaattttgtatatattatgtattgttcttatcaactgagctaagctcacgaggataaat 11949734  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 263
Target Start/End: Complemental strand, 27372425 - 27372382
Alignment:
Q  220 tataatatacattgtccctatcaattgagctaagcttacgagga 263  Q
    |||||||| ||||||||| | |||||||||||||||||||||||    
T  27372425 tataatatgcattgtcccgaccaattgagctaagcttacgagga 27372382  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 252
Target Start/End: Original strand, 39093565 - 39093630
Alignment:
Q  187 gtggtagccggagtttgaacccaaaattttgtatataatatacattgtccctatcaattgagctaa 252  Q
    ||||||| ||| |||||||||| ||| |||| ||||| ||| |||||||| || ||||||||||||    
T  39093565 gtggtagtcggggtttgaaccctaaactttgcatatattatgcattgtccttaccaattgagctaa 39093630  T

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Target: scaffold0045 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 263
Target Start/End: Complemental strand, 63921 - 63857
Alignment:
Q  199 gtttgaacccaaaattttgtatataatatacattgtccctatcaattgagctaagcttacgagga 263  Q
    |||||||||  ||| |||||||||| ||||||||||||||| ||| |||||||| || |||||||    
T  63921 gtttgaacctcaaactttgtatatattatacattgtccctaccaactgagctaaactcacgagga 63857  T

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Target: scaffold0045; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 263
Target Start/End: Complemental strand, 71253 - 71189
Alignment:
Q  199 gtttgaacccaaaattttgtatataatatacattgtccctatcaattgagctaagcttacgagga 263  Q
    |||||||||  ||| |||||||||| ||||||||||||||| ||| |||||||| || |||||||    
T  71253 gtttgaacctcaaactttgtatatattatacattgtccctaccaactgagctaaactcacgagga 71189  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 42200684 - 42200728
Alignment:
Q  219 atataatatacattgtccctatcaattgagctaagcttacgagga 263  Q
    ||||| ||||||||||||||||||| ||||||||||| |||||||    
T  42200684 atatattatacattgtccctatcaactgagctaagctcacgagga 42200728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 263
Target Start/End: Complemental strand, 35061706 - 35061631
Alignment:
Q  188 tggtagccggagtttgaacccaaaattttgtatataatatacattgtccctatcaattgagctaagcttacgagga 263  Q
    |||| ||||| |||||||||  |||| ||||||||| |||  |||||| ||||||||||| ||||||| |||||||    
T  35061706 tggtggccggggtttgaacctcaaatgttgtatatattatgtattgtctctatcaattgaactaagctcacgagga 35061631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 263
Target Start/End: Complemental strand, 8137994 - 8137930
Alignment:
Q  199 gtttgaacccaaaattttgtatataatatacattgtccctatcaattgagctaagcttacgagga 263  Q
    |||||||||| ||| |||| ||||  ||| |||||||| || ||| |||||||||||||||||||    
T  8137994 gtttgaaccccaaactttgcatattttatgcattgtccataccaactgagctaagcttacgagga 8137930  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 264
Target Start/End: Complemental strand, 17883958 - 17883882
Alignment:
Q  188 tggtagccggagtttgaacccaaaattttgtatataatatacattgtccctatcaattgagctaagcttacgaggat 264  Q
    |||| |||||||||||||||||| |  ||| ||||| |||||||| ||| |||||| ||||||||| | ||||||||    
T  17883958 tggtggccggagtttgaacccaagaccttgcatatattatacattatccatatcaagtgagctaaggtcacgaggat 17883882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 263
Target Start/End: Complemental strand, 5526784 - 5526720
Alignment:
Q  199 gtttgaacccaaaattttgtatataatatacattgtccctatcaattgagctaagcttacgagga 263  Q
    |||||||||| |||| || |||||| ||| |||||||| || ||| ||||||||||| |||||||    
T  5526784 gtttgaaccccaaatcttatatatattatgcattgtccataccaactgagctaagctcacgagga 5526720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 42753445 - 42753485
Alignment:
Q  215 ttgtatataatatacattgtccctatcaattgagctaagct 255  Q
    ||||||||| ||||||||||||||| |||||||| ||||||    
T  42753445 ttgtatatattatacattgtccctaccaattgagttaagct 42753485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 49172317 - 49172353
Alignment:
Q  229 cattgtccctatcaattgagctaagcttacgaggata 265  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  49172317 cattgtccctatcaactgagctaagctcacgaggata 49172353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 263
Target Start/End: Complemental strand, 20175796 - 20175720
Alignment:
Q  187 gtggtagccggagtttgaacccaaaattttgtatataatatacattgtccctatcaattgagctaagcttacgagga 263  Q
    ||||| ||||||||| |||| |  ||| ||||||||| |||||||||||| || ||| ||||||||||| |||||||    
T  20175796 gtggtggccggagttcgaactctgaatcttgtatatattatacattgtccataccaactgagctaagctcacgagga 20175720  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 263
Target Start/End: Complemental strand, 28344613 - 28344549
Alignment:
Q  199 gtttgaacccaaaattttgtatataatatacattgtccctatcaattgagctaagcttacgagga 263  Q
    |||||||||| |||  ||| ||||| |||||||||||||| |||| ||| |||||||||||||||    
T  28344613 gtttgaaccccaaaccttgcatatattatacattgtccctttcaactgaactaagcttacgagga 28344549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 263
Target Start/End: Complemental strand, 6489079 - 6489002
Alignment:
Q  186 ggtggtagccggagtttgaacccaaaattttgtatataatatacattgtccctatcaattgagctaagcttacgagga 263  Q
    |||||| ||||| |||||||||| | |  ||| ||||| ||| ||||||||||| ||| ||||||||||| |||||||    
T  6489079 ggtggtggccggggtttgaaccccagaccttgcatatattatgcattgtccctaccaactgagctaagctcacgagga 6489002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 263
Target Start/End: Complemental strand, 14232908 - 14232860
Alignment:
Q  217 gtatataatatacattgtccctat--caattgagctaagcttacgagga 263  Q
    ||||||| ||||||||||||||||  ||||||||||||||| |||||||    
T  14232908 gtatatattatacattgtccctatatcaattgagctaagctcacgagga 14232860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 272
Target Start/End: Original strand, 17064886 - 17064939
Alignment:
Q  219 atataatatacattgtccctatcaattgagctaagcttacgaggataaattctt 272  Q
    ||||||||| || | |||||| |||||||| |||||| ||||||||||||||||    
T  17064886 atataatatgcaatatccctaccaattgagttaagctcacgaggataaattctt 17064939  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 255
Target Start/End: Original strand, 34860168 - 34860204
Alignment:
Q  219 atataatatacattgtccctatcaattgagctaagct 255  Q
    |||||||||||| | ||||||||||||||||||||||    
T  34860168 atataatatacaatatccctatcaattgagctaagct 34860204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 40715971 - 40716015
Alignment:
Q  219 atataatatacattgtccctatcaattgagctaagcttacgagga 263  Q
    ||||| ||| |||||||| |||||||||||||||||| |||||||    
T  40715971 atatattatgcattgtccatatcaattgagctaagctcacgagga 40716015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 31316680 - 31316628
Alignment:
Q  215 ttgtatataatatacattgtccctatcaattgagctaagcttacgaggataaa 267  Q
    |||||||||||||||| | |||||||||| ||||||||||| ||| |||||||    
T  31316680 ttgtatataatatacaatatccctatcaactgagctaagctcacggggataaa 31316628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 260
Target Start/End: Complemental strand, 21549077 - 21549036
Alignment:
Q  219 atataatatacattgtccctatcaattgagctaagcttacga 260  Q
    ||||| |||||||||||| |||||| ||||||||||||||||    
T  21549077 atatattatacattgtccatatcaactgagctaagcttacga 21549036  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 29687121 - 29687072
Alignment:
Q  219 atataatatacattgtccctatcaattgagctaagcttacgaggataaat 268  Q
    |||||||||| ||||||| |||||| ||||||||||| ||||||| ||||    
T  29687121 atataatatatattgtccatatcaactgagctaagctcacgaggacaaat 29687072  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 261
Target Start/End: Complemental strand, 1238205 - 1238159
Alignment:
Q  215 ttgtatataatatacattgtccctatcaattgagctaagcttacgag 261  Q
    ||||||||| ||| |||||||||||||||||||| |||||| |||||    
T  1238205 ttgtatatattatgcattgtccctatcaattgagttaagctcacgag 1238159  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 263
Target Start/End: Complemental strand, 23984044 - 23983999
Alignment:
Q  218 tatataatatacattgtccctatcaattgagctaagcttacgagga 263  Q
    |||||| ||| |||||||| || |||||||||||||||||||||||    
T  23984044 tatatattatgcattgtccataccaattgagctaagcttacgagga 23983999  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 268
Target Start/End: Original strand, 30836301 - 30836370
Alignment:
Q  199 gtttgaacccaaaattttgtatataatatacattgtccctatcaattgagctaagcttacgaggataaat 268  Q
    ||||||||||  ||||||||| ||| ||| ||||||| ||  ||| ||||||||||||||||||| ||||    
T  30836301 gtttgaaccctgaattttgtaaatattatgcattgtctctgccaactgagctaagcttacgaggacaaat 30836370  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 263
Target Start/End: Complemental strand, 27244696 - 27244652
Alignment:
Q  219 atataatatacattgtccctatcaattgagctaagcttacgagga 263  Q
    ||||| ||| ||||||||||||||| ||||||||||| |||||||    
T  27244696 atatattatgcattgtccctatcaactgagctaagctcacgagga 27244652  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 255
Target Start/End: Complemental strand, 34242881 - 34242825
Alignment:
Q  200 tttgaacccaaaattttgtata-taatatacattgtccctatcaattgagctaagct 255  Q
    ||||||||| ||| |||| ||| || ||| |||||||||||||||||||||||||||    
T  34242881 tttgaaccccaaactttgcataatattatgcattgtccctatcaattgagctaagct 34242825  T

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