View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21319_low_23 (Length: 330)
Name: NF21319_low_23
Description: NF21319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21319_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 17 - 321
Target Start/End: Original strand, 13590937 - 13591242
Alignment:
| Q |
17 |
cacataacaacccttaattttctcaagt-tttgcccatatataaggaattacttagggcttaggaactcataactcatctcaatcataaaacacgttttt |
115 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
13590937 |
cacataacaacccttaattttctcaagtctttgcccatatataaggaattacttagggcttaggaactcataactcatctcaatcataaaacaagttttt |
13591036 |
T |
|
| Q |
116 |
gagcaaaaaagagcatcgttggttcaattcagagagagcattctctatcgatatttttccagnnnnnnncatggctaccgtcaacaaccaccagcacaac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
13591037 |
gagcaaaaaagagcatcgttggttcaattcagagagagcattctctatcgatatttttccagaaaaaaacatggctaccgtcaacaaccaccagcacaac |
13591136 |
T |
|
| Q |
216 |
tccgatcacagcacatacaccgtcaacatgcacggaagcaagataaccgtgactgttacagccttcgcctccatagtggaaaactggatcaaaacaacat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13591137 |
tccgatcacagcacatacaccgtcaacatgcacggaagcaagataaccgtgactgttacagccttcgcctccatagtggaaaactggatcaaaacaacat |
13591236 |
T |
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| Q |
316 |
tcatct |
321 |
Q |
| |
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|||||| |
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| T |
13591237 |
tcatct |
13591242 |
T |
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