View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21319_low_24 (Length: 329)
Name: NF21319_low_24
Description: NF21319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21319_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 9 - 312
Target Start/End: Complemental strand, 51431490 - 51431179
Alignment:
| Q |
9 |
ataatactgttggttgaagtggtatgtcttcaatagcatgtgcattcatcatgtacaagca---agaaacttagtatttattactatgttatgtt----- |
100 |
Q |
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| T |
51431490 |
ataatactgttggttgaagtggtatgtctccaatagcatgtgcattcatcatgtacaagcagcaagaaacttagtatttattactatgttatgttatgtt |
51431391 |
T |
|
| Q |
101 |
ctccacaccatgttatatgcctaattaataattattgaaccttaatgtgtaactgtcaatgtctagcaaatatccactgttatgcttagaagtcagaaca |
200 |
Q |
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| T |
51431390 |
ctccacaccatgttatatgcctaattaataattattgaaccttaatgtgtaactgtcaatgtctaccaaatatccactgttatgcttagaagtcagaaca |
51431291 |
T |
|
| Q |
201 |
catgccttttaaattgttattaatgtgtctgtacaattgattatcaattacgnnnnnnncatgatgccatttgtttcctttgtactaaggacaagatttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
51431290 |
catgccttttaaattgttattaatgtgtctgtacaattgattatcaattatgtatttttcatgatgccatttgtttcctttgtactaaggacgagatttt |
51431191 |
T |
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| Q |
301 |
ctaacgtccatt |
312 |
Q |
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|||||||||||| |
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| T |
51431190 |
ctaacgtccatt |
51431179 |
T |
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