View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21319_low_25 (Length: 322)
Name: NF21319_low_25
Description: NF21319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21319_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 21 - 281
Target Start/End: Complemental strand, 41921740 - 41921480
Alignment:
| Q |
21 |
ggatcatcatgttctcgtggaggatactataaacaaaagttagaaatatgaacatatataactttcatgtgtataaaaaagcttactttgtgattatttt |
120 |
Q |
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| T |
41921740 |
ggatcatcatgttctcgtgaaggatactataaacaaaagttagaaatatgaactaatataactttcatgtgtataaaaaagcttactttgtgattatttt |
41921641 |
T |
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| Q |
121 |
gacacctacctcagctagaagagggtgattatccgtgaggacataactgaacagataaaggaaaaatgcataagtcttggcatataaagtagtaagtaat |
220 |
Q |
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| T |
41921640 |
gacacctacctcagctagaagagggtgattatccgtgaggacataactgaacagattaaggaaaaatgcataagtcttggcatataaagtagcaagtaat |
41921541 |
T |
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| Q |
221 |
ttctttaaatttgaaatatctatttgttgttaaaatgttttctcaaaaattaaacaaaact |
281 |
Q |
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| T |
41921540 |
ttctttaaatttgaaatatctatttgttgttaaaatgttttctcaaaaattaaacaaaact |
41921480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 74 - 255
Target Start/End: Complemental strand, 1699003 - 1698822
Alignment:
| Q |
74 |
atatataactttcatgtgtataaaaaagcttactttgtgattattttgacacctacctcagctagaagagggtgattatccgtgaggacataactgaaca |
173 |
Q |
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| T |
1699003 |
atatataactttcatgtgtgtataacaatttacttcgtgattattttgatacctacctcagttaggagaggatgattatccgtgaggacataactgaata |
1698904 |
T |
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| Q |
174 |
gataaagga--aaaatgcataagtcttggcatataaagtagtaagtaatttctttaaatttgaaatatctatttgttgttaaaa |
255 |
Q |
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| T |
1698903 |
gataaaggaaaaaaatgcat--gtcttagcatatgaagtagtaagtaatttatttaaatttgaaatatctacatgttgttaaaa |
1698822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 74 - 181
Target Start/End: Complemental strand, 36000744 - 36000637
Alignment:
| Q |
74 |
atatataactttcatgtgtataaaaaagcttactttgtgattattttgacacctacctcagctagaagagggtgattatccgtgaggacataactgaaca |
173 |
Q |
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| T |
36000744 |
atatataattttgatgtgtgtattaaagtgtactttgtgattattttgggacttacctcaactaggagagggtgattatccttaagaacataactgaaca |
36000645 |
T |
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| Q |
174 |
gataaagg |
181 |
Q |
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| T |
36000644 |
aataaagg |
36000637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 1699074 - 1699046
Alignment:
| Q |
20 |
aggatcatcatgttctcgtggaggatact |
48 |
Q |
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| T |
1699074 |
aggatcatcatgttctcgtggaggatact |
1699046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 110 - 244
Target Start/End: Complemental strand, 1310097 - 1309963
Alignment:
| Q |
110 |
gtgattattttgacacctacctcagctagaagagggtgattatccgtgaggacataactgaacagataaaggaaaaatgcataagtcttggcatataaag |
209 |
Q |
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|||||||||||| |||||||| |||| |||||||||| |||||| |||||||||||||| ||||||| |||| | | |||| || |||| |||| |
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| T |
1310097 |
gtgattattttgctacctaccttgactaggagagggtgatcatccgttaggacataactgaatagataaaacaaaattacgtaaggattagcatgcaaag |
1309998 |
T |
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| Q |
210 |
tagtaagtaatttctttaaatttgaaatatctatt |
244 |
Q |
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| T |
1309997 |
tagtaagtaacttctttaaatttgaaatatctatt |
1309963 |
T |
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